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Table 5b Performance of a dye combination in revealing modulated genes in B[a]P (10 μM) treated HepG2 cells using a cDNA array.

From: Application of four dyes in gene expression analyses by microarrays

  Cy3-Cy5 A594-Cy3 Cy5-A488 A488-A594
Cy3-Cy5 29*    
A594-Cy3 23 58   
Cy5-A488 6 10 16  
A488-A594 26 39 13 74
  1. * In bold the intersection of two gene lists indicating the modulated genes for a dye combination as percentage of all modulated genes (31 genes) found by analysis of all dye combinations combined. In italics the intersection of three gene lists indicating the modulated genes for two dye combinations as percentage of all modulated genes found for all dye combinations combined. The first dye was used for B[a]P treatment, the second for the control.