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Table 5c Performance of a dye combination in revealing modulated genes in B[a]P (30 μM) treated HepG2 cells using a cDNA array.

From: Application of four dyes in gene expression analyses by microarrays

  Cy3-A488 A488-Cy3 Cy5-A594 A594-Cy5
Cy3-A488 35*    
A488-Cy3 24 53   
Cy5-A594 22 33 38  
A594-Cy5 16 20 16 31
  1. * In bold the intersection of two gene lists indicating the modulated genes for a dye combination as percentage of all modulated genes (45 genes) found by analysis of all dye combinations combined. In italics the intersection of three gene lists indicating the modulated genes for two dye combinations as percentage of all modulated genes found for all dye combinations combined. The first dye was used for B[a]P treatment, the second for the control.