Conjugative plasmid pAW63 brings new insights into the genesis of the Bacillus anthracis virulence plasmid pXO2 and of the Bacillus thuringiensis plasmid pBT9727

Van der Auwera, Géraldine A; Andrup, Lars; Mahillon, Jacques

doi:10.1186/1471-2164-6-103

Table 1 CDSs of pAW63: homologies and comparison with pXO2 and pBT9727

From: Conjugative plasmid pAW63 brings new insights into the genesis of the Bacillus anthracis virulence plasmid pXO2 and of the Bacillus thuringiensis plasmid pBT9727

pAW63	s	coordinates		size (aa)	most relevant homology	pXO2		pBT9727
CDS*		start	stop		function / microorganism / (amino acid identity percentage 'id %')	CDS*	id %	CDS*	id %
#001	-	1151	542	203	-	#001	77%	#001	67%
#002	-	1450	1162	96	hypothetical protein Efae03001129 Enterococcus faecium (29%)	#002	55%	#002	52%
#003	-	2585	1727	286	chromosome segregation ATPase E. faecium (25%)	#004	80%	#003	67%
#004	-	2857	2581	92	-	#005	92%	#004	62%
#005	-	3554	2945	203	-	#006	93%	#006	60%
#006	-	4333	3577	252	Tn916 ORF 14, similar to NLP/p60 family lipoprotein E. faecalis (37%)	#007	88%	#007	78%
#007	-	6254	4448	602	Type II intron reverse transcriptase IepA Bacillus megaterium (44%)	-	-	-	-
#008	-	7314	6927	129	Tn916 ORF 14, similar to NLP/p60 family lipoprotein E. faecalis (37%)	#007	77%	#007	61%
#009	-	9250	7315	645	VirB4, Type IV secretory pathway E. faecium (37%)	#008	95%	#008	80%
#010	-	9935	9266	223	ATPase involved in DNA repair E. faecium (30%)	#009	91%	#009	75%
#011	-	10315	10000	105	-	#010	95%	#010	79%
#012	-	11142	10377	255	-	-	-	-	-
#013	-	14900	11528	1124	adhesin AidA, Type V secretory pathway E. faecium (25%)	#013	74%	#013	48%
#014	-	16905	14925	660	VirD4, Type IV secretory pathway E. faecium (42%)	#014	79%	#014	85%
#015	-	18508	17839	223	VirD4, Type IV secretory pathway E. faecium (38%)	#015	94%	#014	83%
#016	-	20463	18534	643	putative membrane protein (no bacterial homologs)	#016	65%	#015	50%
#017	-	20847	20547	100	-	#017	72%	#016	43%
#018	-	21116	20864	84	-	#018	89%	#017	63%
#019	-	21662	21299	121	hypothetical protein Listeria monocytogenes (37%)	#020	83%	#018	58%
#020	-	22452	21702	250	conserved hypothetical proteinL. monocytogenes (34%)	#021	99%	#019	70%
#021	-	23282	22448	278	conserved hypothetical proteinL. monocytogenes (32%)	#022	69%	#020	61%
#022	-	24648	23316	444	VirB11, Type II/IV secretion system L. monocytogenes (35%)	#023	87%	#021	70%
#023	-	25024	24664	120	conserved hypothetical protein L. monocytogenes (37%)	#024	94%	#022	70%
#024	-	25273	25123	50	-	#025	57%	-	-
#025	-	25735	25360	125	-	#026	77%	#023	68%
#026	-	30002	25754	1416	cell surface protein, similar to Rhs family Bacillus cereus (20%)	#027	78%	#024	84%
#027	-	30709	30556	51	-	-	-	-	-
#028	-	31117	30724	131	-	-	-	-	-
#029	-	31693	31204	163	-	-	-	-	-
#030	-	32268	31794	158	-	-	-	-	-
#031	-	32492	32300	64	-	-	-	-	-
#032	-	33216	32880	112	-	-	-	-	-
#033	-	33820	33694	42	-	-	-	-	-
#034	-	33693	33234	153	-	-	-	#026	58%
#035	-	34082	33827	85	-	-	-	-	-
#036	-	34439	34100	113	-	-	-	-	-
#037	-	34874	34622	84	-	-	-	#028	66%
#038	-	35824	34972	284	-	-	-	-	-
#039	-	36199	35968	77	-	-	-	#033	50%
#040	-	36488	36371	39	-	-	-	-	-
#041	-	37060	36571	163	-	#031	88%	#034	39%
#042	-	37861	37336	175	-	#032	84%	#036	50%
#043	-	38649	38346	101	-	#033	90%	#037	60%
#044	-	39688	39532	52	-	#034	66%	-	-
#045	-	40902	39684	406	prophage helix-turn-helix protein Bacillus cereus G9241 (25%)	#036	89%	#038	59%
#046	-	41848	41089	253	-	#038	88%	#045	70%
#047	-	43592	42050	514	replication protein RepE E. faecalis (40%)	#039	96%	#046	83%
#048	+	44458	45385	309	replication-associated protein RepB E. faecalis	-	-	-	-
#049	+	45347	45671	108	putative replication-associated (no homologies) (31%)	-	-	-	-
#050	-	46557	45735	274	-	-	-	-	-
#051	-	48301	46663	546	pheromone binding protein B. cereus G9241 (73%)	#089	90%	#055	80%
#052	-	49424	48788	212	DNA-binding protein B. cereus G9241 (53%)	#093	61%	#059	77%
#053	+	49620	49968	116	conserved hypothetical protein Staphylococcus aureus (31%)	#095	75%	#062	71%
#054	+	50020	50407	129	group specific protein B. cereus ZK (75%)	#096	77%	#063	76%
#055	-	51260	50471	263	hypothetical protein lpl1076 Legionella pneumophila (49%)	-	-	-	-
#056	-	51589	51343	82	hypothetical protein B. cereus ATCC 14579 (60%)	-	86%	-	-
#057	+	52288	53362	358	RapD response regulator B. thuringiensis (94%)	-	-	-	-
#058	-	54506	53636	290	transposase, IS5 family Aneurinibacillus thermoaerophilus (52%)	-	-	-	-
#059	+	54988	55699	237	-	-	-	-	-
#060	+	56252	56870	206	site-specific recombinase, resolvase Clostridium thermocellum (54%)	-	-	#065	69%
#061	+	57303	57834	177	phage site-specific recombinase B. cereus ATCC 14579 (64%)	#101	-	#066	73%
#062	-	58650	58203	149	CAAX N-terminal protease B. cereus ATCC 14579 (35%)	#103	-	#071	68%
#063	-	60821	58679	714	DNA topoisomerase, TrsI/TraI Lactococcus lactis (45%)	#104	-	#072	74%
#064	-	61323	60942	127	-	-	-	-	-
#065	-	62731	61429	434	conserved hypothetical protein B. cereus G9241 (35%)	-	-	-	-
#066	-	63383	62798	195	AbiQ abortive infection mechanism L. lactis (34%)	-	-	#073	28%
#067	-	64659	63633	342	signal transduction histidine kinase E. faecium (38%)	#107	90%	#074	83%
#068	-	65290	64738	184	putative membrane-bound hydrolase Bacillus licheniformis (32%)	#109	-	#075	92%
#069	-	66240	65313	309	-	#110	83%	#076	60%
#070	-	67475	66302	391	ATPase involved in DNA repair E. faecium (42%)	#111	77%	#077	94%
#071	-	67681	67471	70	-	#112	62%	#078	75%
#072	-	68132	67703	143	-	#113	80%	#079	69%
#073	-	68628	68151	159	-	-	-	-	-
#074	-	69124	68695	143	-	-	-	-	-
#075	-	70679	69197	494	-	-	49%	#079	50%
#076	-	71773	70744	343	ATPase involved in DNA repair E. faecium (36%)	-	96%	#080	83%

* CDS numbers are abbreviated forms originating from their formal designations: pAW63-###, GBAA_pXO2_0###, pBT9727_0###

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ISSN: 1471-2164

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