Table 2 Genes used in this study. From the data of Gibson et al. (2004), 34 candidate genes were chosen for study whose transcripts were expressed to higher levels in either Oregon R (OrR) or Russian 2b (R2b) strain (P < 0.01) (first geneset) or did not vary between strains (P > 0.1) (second geneset) and did not vary between the sexes or have sex by strain interaction (P > 0.05 or P > 0.1, for the two genesets respectively). (CODE, CG number from FlyBase Release 3.0; EXP. DIFF., indicates where gene expression on microarray does or does not vary between strains; N, number of replicate probes representing gene on microarray; CHR., chromosomal location; LEN., length of promoter analyzed in this study; ACC. #, GenBank accession numbers for gene's proximal promoter in the OrR strain followed by the R2b strain)
CODE | NAME | EXP. DIFF. | N | CHR. | FUNCTION | LEN. | ACC. # |
|---|---|---|---|---|---|---|---|
CG1762 | Bintv | OrR>R2b | 4 | 2L | cell adhesion | 1518 | DQ017407,6 |
CG1944 | CYP4P2 | OrR>R2b | 5 | 2R | steroid metabolism | 1530 | DQ017409,8 |
CG5105 | Plap | OrR>R2b | 5 | 2L | phospholipase A2 activator | 1539 | DQ017395,4 |
CG5952 | Fer2 | OrR = R2b | 3 | 3R | transcription factor | 1452 | DQ017400,1 |
CG6547 | mRpL2a | OrR = R2b | 3 | 3R | ribosome structure | 1448 | DQ017398,9 |
CG7779 | Cng | OrR = R2b | 5 | 2R | cation channel | 1622 | DQ017397,6 |
CG8095 | Scab | OrR>R2b | 5 | 2R | cell adhesion | 1652 | DQ017403,2 |
CG9765 | tacc | OrR = R2b | 3 | 3R | microtubule binding | 1428 | DQ017405,4 |
CG10488 | eyg | OrR>R2b | 4 | 3L | transcription factor | 1494 | DQ017410,1 |
CG14827 | mei-P22 | OrR = R2b | 4 | 3L | meiotic recombination | 1392 | DQ017412,3 |
CG1922 | onecut | OrR = R2b | 3 | 4 | transcription factor | 2410 | DQ017414,5 |
CG3584 | qkr58E-3 | R2b>OrR | 3 | 2R | RNA binding | 1720 | DQ017416,7 |
CG3616 | CYP9C1 | R2b>OrR | 3 | 2R | unknown | 1645 | DQ017418,9 |
CG3758 | esg | OrR = R2b | 3 | 2L | transcription factor | 1890 | DQ017420,1 |
CG4485 | CYP9B1 | R2b>OrR | 3 | 2R | unknown | 1629 | DQ017422,3 |
CG4871 | ST6Gal | OrR>R2b | 3 | 2R | polysaccharide metabolism | 1776 | DQ017424,5 |
CG5517 | Ide | OrR>R2b | 3 | 3L | unknown | 1746 | DQ017426,7 |
CG6715 | KP78a | OrR = R2b | 3 | 3R | protein kinase | 1623 | DQ017428,9 |
CG8585 | Ih | OrR = R2b | 3 | 2R | cation channel | 1516 | DQ017430,1 |
CG9847 | Fkbp13 | R2b>OrR | 4 | 2R | protein folding | 1676 | DQ017432,3 |
CG10002 | fkh | OrR = R2b | 3 | 3R | transcription factor | 1857 | DQ017434,5 |
CG10094 | CYP313A2 | OrR = R2b | 3 | 3R | steroid metabolism | 1537 | DQ017436,7 |
CG10692 | Mt2 | OrR = R2b | 3 | 2L | DNA methylation | 1577 | DQ017438,9 |
CG11084 | pk | OrR = R2b | 3 | 2R | cell polarity | 1523 | DQ017440,1 |
CG11186 | toy | OrR>R2b | 3 | 4 | transcription factor | 2061 | DQ017442,3 |
CG11895 | stan | OrR = R2b | 3 | 2R | GPC receptor | 1636 | DQ017444,5 |
CG15807 | CYP313A5 | OrR = R2b | 3 | 3R | steroid metabolism | 1390 | DQ017446,7 |
CG16963 | Cry | OrR>R2b | 3 | 2L | eye lens structure | 1769 | DQ017448,9 |
CG18647 | bin | R2b>OrR | 3 | 3L | transcription factor | 1595 | DQ017450,1 |
CG4088 | lat | R2b>OrR | 3 | 2R | olfactory learning | 2000 | DQ017455,4 |
CG9379 | by/tensin | R2b>OrR | 3 | 3R | actin binding | 1498 | DQ017456,7 |
CG9712 | TSG101 | R2b>OrR | 3 | 3L | ubiquitin-protein ligase | 1374 | DQ017453,2 |
CG13432 | l(2)05510 | R2b>OrR | 3 | 2R | unknown | 1404 | DQ017458,9 |
CG31908 | NA | R2b>OrR | 2 | 2L | unknown | 1328 | DQ017460,1 |