Table 1 The coding envelope genes of the human genome studied for their SNPs.
Gene name | Bibliographic gene name | Family name (repbase identifier) | Approximate number of elements | Genomic localization | Amplification primers sequence (5'-3') |
|---|---|---|---|---|---|
env K1 | - | HERV-K(HML-2) (HERVK) | 50–100 | Chr12: 57008431–57010527 (-) | F: GGGAAATAGGGAAGGTGATA R: ACATCCCTAACGCTTTAAG |
env K2 | HML-2.HOM, HERV-K108 | idem | idem | Chr7: 4367317–4369416 (-) | F: GAGGTTTTGCTTGTGTTTCA R: TTAGGCTTTCGGGACTTCAA |
env K4 | HERV-K109 | idem | idem | Chr6: 78423172–78425268 (-) | F: GGGAAATAGGGAAGGTGATA R: GGGTAGTATCAGTCGGGATG |
env F(c)1 | - | HERV-F(c)1 (-) | 1 | Chr:X: 95874118–95875872 (+) | F: GCACCGACTCAGCACGAC R: GCCTTGGCAACTAAACCATTC |
env F(c)2 | - | HERV-F(c)2 (-) | 15 | Chr7:152498167–152499936 (-) | F: GAAGGCACCTACACAACATC R: GACACTTAATAGTTGCGACA |
env H1 | envH/p62, H19 | HERV-H (HERVH) | 1000 | Chr2: 166767244–166768998 (-) | F: ATGCCCTACTCTTGTTTACAC R: AAATCTGGCAAACTACAAGC |
env H3 | envH/p59 | idem | idem | Chr2: 155931277–155932944 (+) | F: TTTCTTCAAGCCATCACAGC R: ACCCCATGTTCTAGTCTTCC |
env T | - | HERV-T (HERVS71) | 50 | Chr19: 20341241–20343121 (+) | F: TTGGATTCATCACTCCCA R: CTGAAGGGAGTTCCTCCTAGG |
env W | Syncytin 1 | HERV-W (HERV17) | 200 | Chr7: 91710108–91711724 (-) | F: AACAACCAGGAGGAAAGTAA R: CTGATCAAGTCGCAAAGC |
env R | erv3 | HERV-R (HERV3) | 100 | Chr7: 63863079–63865094 (-) | F: GGTTAGAAATCTGAAGTCC R: AAAGTCAATGACAGATGCGG |
env R(b) | - | HERV-R(b) (PABL_B) | 50 | Chr3: 16786814–16788358 (+) | F: GCTAAGCACCAGTTCAGCACTG R: TGTTTTGGGACACCACGAAT |
env FRD | Syncytin 2 | HERV-FRD (MER50) | 3000 | Chr:6: 11211913–11213529 (-) | F: CTTGTACACCACCAGGAGTTCC R: TTTGAGCAAGGGTGATTCAT |