TY - JOUR AU - Thorgaard, G. H. AU - Bailey, G. S. AU - Williams, D. AU - Buhler, D. R. AU - Kaattari, S. L. AU - Ristow, S. S. AU - Hansen, J. D. AU - Winton, J. R. AU - Bartholomew, J. L. AU - Nagler, J. J. AU - Walsh, P. J. AU - Vijayan, M. M. AU - Devlin, R. H. AU - Hardy, R. W. AU - Overturf, K. E. AU - Young, W. P. AU - Robison, B. D. AU - Rexroad, C. AU - Palti, Y. PY - 2002 DA - 2002// TI - Status and opportunities for genomics research with rainbow trout JO - Comp Biochem Physiol B Biochem Mol Biol VL - 133 UR - https://doi.org/10.1016/S1096-4959(02)00167-7 DO - 10.1016/S1096-4959(02)00167-7 ID - Thorgaard2002 ER - TY - JOUR AU - Katchamart, S. AU - Miranda, C. L. AU - Henderson, M. C. AU - Pereira, C. B. AU - Buhler, D. R. PY - 2002 DA - 2002// TI - Effect of xenoestrogen exposure on the expression of cytochrome P450 isoforms in rainbow trout liver JO - Environ Toxicol Chem VL - 21 UR - https://doi.org/10.1002/etc.5620211125 DO - 10.1002/etc.5620211125 ID - Katchamart2002 ER - TY - JOUR AU - William, D. E. AU - Bailey, G. S. AU - Reddy, A. AU - Hendricks, J. D. AU - Oganesian, A. AU - Orner, G. A. AU - Pereira, C. B. AU - Swenberg, J. A. PY - 2003 DA - 2003// TI - The rainbow trout (Oncorhynchus mykiss) tumor model:recent applications in low-dose exposures to tumor initiators and promoters JO - Toxicol Pathol VL - 31 ID - William2003 ER - TY - JOUR AU - Shum, B. P. AU - Guethlein, L. AU - Flodin, L. R. AU - Adkison, M. A. AU - Hedrick, R. P. AU - Nehring, R. B. AU - Stet, R. J. M. AU - Secombes, C. AU - Parham, P. PY - 2001 DA - 2001// TI - Modes of salmonid MHC class I and II evolution differ from the primate paradigm JO - J Immunol VL - 166 UR - https://doi.org/10.4049/jimmunol.166.5.3297 DO - 10.4049/jimmunol.166.5.3297 ID - Shum2001 ER - TY - JOUR AU - Basu, N. AU - Todgham, A. E. AU - Ackerman, P. A. AU - Bibeau, M. R. AU - Nakano, K. AU - Schulte, P. M. AU - Iwama, G. K. PY - 2002 DA - 2002// TI - Heat shock protein genes and their functional significance in fish JO - Gene VL - 295 UR - https://doi.org/10.1016/S0378-1119(02)00687-X DO - 10.1016/S0378-1119(02)00687-X ID - Basu2002 ER - TY - JOUR AU - Zhang, C. AU - Brown, S. B. AU - Hara, T. J. PY - 2001 DA - 2001// TI - Biochemical and physiological evidence that bile acids produced and released by lake char (Salvelinus namaycush) function as chemical signals JO - J Comp Physiol [B] VL - 171 UR - https://doi.org/10.1007/s003600000170 DO - 10.1007/s003600000170 ID - Zhang2001 ER - TY - JOUR AU - Faillace, M. P. AU - Julian, D. AU - Korenbrot, J. I. PY - 2002 DA - 2002// TI - Mitotic activation of proliferative cells in the inner nuclear layer of the mature fish retina: regulatory signals and molecular markers JO - J Comp Neurol VL - 451 UR - https://doi.org/10.1002/cne.10333 DO - 10.1002/cne.10333 ID - Faillace2002 ER - TY - JOUR AU - Tipsmarck, C. K. AU - Madsen, S. S. AU - Seidelin, M. AU - Christensen, A. S. AU - Cutler, C. P. AU - Cramb, G. PY - 2002 DA - 2002// TI - Dynamics of Na(+), K(+), 2Cl(-) cotransporter and Na(+), K(+)-ATPase expression in the branchial epithelium of brown trout (Salmo trutta) and Atlantic salmon (Salmo salar) JO - J Exp Zool VL - 293 UR - https://doi.org/10.1002/jez.10118 DO - 10.1002/jez.10118 ID - Tipsmarck2002 ER - TY - JOUR AU - Devlin, R. H. AU - Biagi, C. A. AU - Yesaki, T. Y. AU - Smailus, D. E. AU - Byatt, J. C. PY - 2001 DA - 2001// TI - Growth of domesticated transgenic fish JO - Nature VL - 409 UR - https://doi.org/10.1038/35057314 DO - 10.1038/35057314 ID - Devlin2001 ER - TY - JOUR AU - Madigou, T. AU - Uzbekova, S. AU - Lareyre, J. J. AU - Kah, O. PY - 2002 DA - 2002// TI - Two messenger RNA isoforms of the gonadotrophin-releasing hormone receptor, generated by alternative splicing and/or promoter usage, are differentially expressed in rainbow trout gonads during gametogenesis JO - Mol Reprod Dev VL - 63 UR - https://doi.org/10.1002/mrd.90006 DO - 10.1002/mrd.90006 ID - Madigou2002 ER - TY - JOUR AU - Rise, M. L. AU - von Schalburg, K. R. AU - Brown, G. D. AU - Mawer, M. A. AU - Devlin, R. H. AU - Kuipers, N. AU - Busby, M. AU - Beetz-Sargent, M. AU - Alberto, R. AU - Gibbs, A. R. AU - Hunt, P. AU - Shukin, R. AU - Zeznik, J. A. AU - Nelson, C. AU - Jones, S. R. AU - Smailus, D. E. AU - Jones, S. J. AU - Schein, J. E. AU - Marra, M. A. AU - Butterfield, Y. S. AU - Stott, J. M. AU - Ng, S. H. AU - Davidson, W. S. AU - Koop, B. F. PY - 2004 DA - 2004// TI - Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.1687304 DO - 10.1101/gr.1687304 ID - Rise2004 ER - TY - JOUR AU - von Schalburg, K. R. AU - Rise, M. L. AU - Brown, G. D. AU - Davidson, W. S. AU - Koop, B. F. PY - 2005 DA - 2005// TI - A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary JO - Biol Reprod VL - 72 UR - https://doi.org/10.1095/biolreprod.104.034967 DO - 10.1095/biolreprod.104.034967 ID - von Schalburg2005 ER - TY - JOUR AU - Rise, M. L. AU - Jones, S. R. AU - Brown, G. D. AU - von Schalburg, K. R. AU - Davidson, W. S. AU - Koop, B. F. PY - 2004 DA - 2004// TI - Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection JO - Physiol Genomics VL - 20 UR - https://doi.org/10.1152/physiolgenomics.00036.2004 DO - 10.1152/physiolgenomics.00036.2004 ID - Rise2004 ER - TY - STD TI - Abstract. [http://www.intl-pag.org/12/abstracts/P7a_PAG12_825.html] UR - http://www.intl-pag.org/12/abstracts/P7a_PAG12_825.html ID - ref14 ER - TY - STD TI - Abstract. [http://abstracts.co.allenpress.com/pweb/setac2004/document/?ID=42585] UR - http://abstracts.co.allenpress.com/pweb/setac2004/document/?ID=42585 ID - ref15 ER - TY - STD TI - Abstract. [http://abstracts.co.allenpress.com/pweb/setac2004/document/?ID=42564] UR - http://abstracts.co.allenpress.com/pweb/setac2004/document/?ID=42564 ID - ref16 ER - TY - JOUR AU - Ishiguro, N. B. AU - Miya, M. AU - Nishida, M. PY - 2003 DA - 2003// TI - Basal euteleostean relationships: a mitogenomic perspective on the phylogenetic reality of the " Protacanthopterygii" JO - Mol Phylogenet Evol VL - 27 UR - https://doi.org/10.1016/S1055-7903(02)00418-9 DO - 10.1016/S1055-7903(02)00418-9 ID - Ishiguro2003 ER - TY - CHAP AU - Allendorf, F. W. AU - Thorgaard, G. H. ED - Turner, B. J. PY - 1984 DA - 1984// TI - Tetraploidy and the evolution of salmonid fishes BT - Evolutionary Genetics of Fishes PB - Plenum Press CY - New York UR - https://doi.org/10.1007/978-1-4684-4652-4_1 DO - 10.1007/978-1-4684-4652-4_1 ID - Allendorf1984 ER - TY - JOUR AU - Ohno, S. AU - Wolf, U. AU - Atkin, N. B. PY - 1968 DA - 1968// TI - Evolution from fish to mammals by gene duplication JO - Hereditas VL - 59 UR - https://doi.org/10.1111/j.1601-5223.1968.tb02169.x DO - 10.1111/j.1601-5223.1968.tb02169.x ID - Ohno1968 ER - TY - CHAP AU - Gilbert, S. F. PY - 1988 DA - 1988// TI - Control of development by RNA processing BT - Developmental Biology PB - Sinauer Associates, Inc. CY - Sunderland, Massachusetts ID - Gilbert1988 ER - TY - JOUR AU - Kawasawa, Y. AU - McKenzie, L. M. AU - Hill, D. P. AU - Bono, H. AU - Yanagisawa, M. PY - 2003 DA - 2003// TI - G protein-coupled receptor genes in the FANTOM2 database JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1087603 DO - 10.1101/gr.1087603 ID - Kawasawa2003 ER - TY - JOUR AU - Kumar, R. S. AU - Ijiri, S. AU - Kight, K. AU - Swanson, P. AU - Dittman, A. AU - Alok, D. AU - Zohar, Y. AU - Trant, J. M. PY - 2000 DA - 2000// TI - Cloning and functional expression of a thyrotropin receptor from the gonads of a vertebrate (bony fish): potential thyroid-independent role for thyrotropin in reproduction JO - Mol Cell Endocrinol VL - 167 UR - https://doi.org/10.1016/S0303-7207(00)00304-X DO - 10.1016/S0303-7207(00)00304-X ID - Kumar2000 ER - TY - JOUR AU - Yang, Y. H. AU - Dudoit, S. AU - Luu, P. AU - Lin, D. M. AU - Peng, V. AU - Ngai, J. AU - Speed, T. P. PY - 2002 DA - 2002// TI - Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.4.e15 DO - 10.1093/nar/30.4.e15 ID - Yang2002 ER - TY - JOUR AU - Jin, W. AU - Riley, R. M. AU - Wolfinger, R. D. AU - White, K. P. AU - Passador-Gurgel, G. AU - Gibson, G. PY - 2001 DA - 2001// TI - The contribution of sex, genotype and age to transcriptional variance in Drosophila melanogaster JO - Nat Genet VL - 29 UR - https://doi.org/10.1038/ng766 DO - 10.1038/ng766 ID - Jin2001 ER - TY - JOUR AU - Tseng, G. C. AU - Oh, M. K. AU - Rohlin, L. AU - Liao, J. C. AU - Wong, W. H. PY - 2001 DA - 2001// TI - Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.12.2549 DO - 10.1093/nar/29.12.2549 ID - Tseng2001 ER - TY - JOUR AU - Furano, A. V. AU - Duvernell, D. D. AU - Boissinot, S. PY - 2004 DA - 2004// TI - L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish JO - Trends in Genetics VL - 20 UR - https://doi.org/10.1016/j.tig.2003.11.006 DO - 10.1016/j.tig.2003.11.006 ID - Furano2004 ER - TY - JOUR AU - Murata, S. AU - Takasaki, N. AU - Saitoh, M. AU - Okada, N. PY - 1993 DA - 1993// TI - Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution JO - Proc Natl Acad Sci USA VL - 90 UR - https://doi.org/10.1073/pnas.90.15.6995 DO - 10.1073/pnas.90.15.6995 ID - Murata1993 ER - TY - JOUR AU - Goodier, J. L. AU - Davidson, W. S. PY - 1994 DA - 1994// TI - Characterization of a repetitive element detected by NheI in the genomes of Salmo species JO - Genome VL - 37 UR - https://doi.org/10.1139/g94-091 DO - 10.1139/g94-091 ID - Goodier1994 ER - TY - JOUR AU - Goodier, J. L. AU - Davidson, W. S. PY - 1994 DA - 1994// TI - Tc1 transposon-like sequences are widely distributed in salmonids JO - J Mol Biol VL - 241 UR - https://doi.org/10.1006/jmbi.1994.1470 DO - 10.1006/jmbi.1994.1470 ID - Goodier1994 ER - TY - STD TI - University of Washington Genome Centre. [http://www.genome.washington.edu/UWGC] UR - http://www.genome.washington.edu/UWGC ID - ref30 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schäffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - STD TI - The Institute for Genomic Research. [http://www.tigr.org] UR - http://www.tigr.org ID - ref33 ER - TY - JOUR AU - Brazma, A. AU - Hingamp, P. AU - Quackenbush, J. AU - Sherlock, G. AU - Spellman, P. AU - Stoeckert, C. AU - Aach, J. AU - Ansorge, W. AU - Ball, C. A. AU - Causton, H. C. AU - Gaasterland, T. AU - Glenisson, P. AU - Holstege, F. C. AU - Kim, I. F. AU - Markowitz, V. AU - Matese, J. C. AU - Parkinson, H. AU - Robinson, A. AU - Sarkans, U. AU - Schulze-Kremer, S. AU - Stewart, J. AU - Taylor, R. AU - Vilo, J. AU - Vingron, M. PY - 2001 DA - 2001// TI - Minimum information about a microarray experiment (MIAME)-toward standards for microarray data JO - Nat Genet VL - 29 UR - https://doi.org/10.1038/ng1201-365 DO - 10.1038/ng1201-365 ID - Brazma2001 ER - TY - STD TI - Genomics Research on Atlantic Salmon Project. [http://web.uvic.ca/cbr/grasp] UR - http://web.uvic.ca/cbr/grasp ID - ref35 ER - TY - STD TI - National Center for Biotechnology Information Gene Expression Omnibus. [http://www.ncbi.nlm.nih.gov/projects/geo/] UR - http://www.ncbi.nlm.nih.gov/projects/geo/ ID - ref36 ER -