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Table 4 Promoter SNPs distribution on experimental transcription factor binding sites. Genes which have SNPs in experimentally determined transcription factor binding sites. The frequency is not significantly different from the frequency of promoter SNPs in the putative TF binding sites (p-value = 0.348).

From: The distribution of SNPs in human gene regulatory regions

Gene Accession ID SNP Accession ID SNP Position TF Binding Site Start TF Binding Site End Binding Site Name TRANSFAC Binding Site ID
NM_000384 rs9282608 -149 -155 -134 ApoB-site [25] R03692
NM_000384 rs13306199 -82 -86 -61 AF-1-k-apoB [26] R01612
NM_005252 rs4645852 -84 -85 -78 c-fos.5 [27] R00470
NM_002467 rs4645940 -1827 -1834 -1820 c-myc-PUR [28] R04301
NM_002467 rs13250910 -322 -326 -310 NHE [29] R01804
NM_002690 rs2307158 -83 -93 -75 Sp1-human-beta-polymerase [30] R00287
NM_002690 rs2307155 -55 -72 -51 CREB-beta-polymerase [31] R00288
NM_000805 rs9889551 -100 -102 -95 gastrin-negative-element [32] R02031
NM_000176 rs10482604 -708 -713 -691 GRFE [33] R03301
NM_000600 rs13447445 -64 -80 -64 NF-kappaB-IL-6 [34] R01634
NM_000208 rs1864010 -494 -511 -486 Sp1-insulin_receptor [35] R03287
NM_002123 rs2854271 -106 -117 -99 HLA-DQB1-Xbox [36] R03695
NM_001063 rs8177185 -617 -623 -599 transferrin-undefined-site [37] R01453