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Figure 6 | BMC Genomics

Figure 6

From: Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters

Figure 6

Number of spruce consensus sequences (identified by HMM searches against PFAM) relative to the size of the gene families in Arabidopsis (a) and rice (b). Each point represents a protein family detected by the HMM searches with p-score < 1e-10. Point coordinates are the number of genes found in the analysed Angiosperm genome (x axis) and the number of contigs found in the spruce database (y axis), after a log transformation. The red, blue and green lines represent the ratios 1:1, 1:2, and 1:4, respectively. Red points represent sequences found 4 times more in white spruce than in Arabidopsis: 1. AWPM-19-like family [PF05512], 2. Chalcone and stilbene synthases, C-terminal domain [PF02797], 3. Phosphoenolpyruvate carboxykinase [PF01293]. Blue points represent sequences found 4 times more in spruce than in rice : 4. Ribosomal protein S28e [PF01200], 5. Cyclin-dependent kinase regulatory subunit [PF01111], 6. TIR domain [PF01582], 7. Splicing factor 3B subunit 10 [PF07189], 8. Ribosomal Proteins L2, C-terminal domain [PF03947]. Green points represent sequences found 4 times more in spruce compared to both Arabidopsis and rice: 9. Translationally controlled tumour protein [PF00838], 10. S-adenosyl-L-homocysteine hydrolase [PF05221], 11. S-adenosylmethionine synthetase, C-terminal domain [PF02773].

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