From: Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
Libraries, treatments and tissues | Number of reads | Library quality | Sequence quality | ||||
---|---|---|---|---|---|---|---|
 | 3' | 5' | % Empty | % >1.6 Kb | Nb of quality reads | % Quality reads | Average length of quality reads (nt) |
Male strobili development sequence | 1,536 | 1,536 | 4 | 19 | 2,589 | 84 | 527 |
Female cones development sequence | 1,536 | 1,536 | 15 | 9 | 2,324 | 76 | 500 |
Vegetative buds development sequence | 1,536 | 0 | 5 | 15 | 1,062 | 69 | 560 |
Secondary xylem – mature trees | 4,608 | 4,608 | 10 | 27 | 7,735 | 84 | 600 |
Cambium, phloem – mature trees | 4,608 | 3,072 | 2 | 8 | 6,705 | 87 | 635 |
Secondary xylem – girdled seedlings | 3,072 | 0 | 9 | 24 | 1,053 | 69 | 556 |
Cambium to bark – girdled seedlings | 1,536 | 1,536 | NA | NA | 937 | 31 | 577 |
Elongating root tips – saplings | 1,536 | 1,536 | 6 | 19 | 1,053 | 69 | 395 |
Primary, secondary shoots-N treatments | 3,072 | 1,536 | 16 | 50 | 3,031 | 66 | 736 |
Immature somatic embryos | 3,072 | 0 | 4 | 44 | 2,220 | 72 | 692 |
Clean roots systems – N treatments | 1,536 | 0 | 7 | 37 | 858 | 56 | 659 |
Clean roots systems – P treatments | 3,072 | 1,536 | 15 | 19 | 3,776 | 82 | 705 |
Clean roots systems – Diurnal cycle | 6,144 | 4,608 | 16 | 33 | 8,601 | 80 | 757 |
Root secondary xylem – mature trees | 3,072 | 0 | 7 | 8 | 1,532 | 50 | 598 |
Annual flush shoots diurnal cycle – trees | 4,608 | 3,072 | 11 | 10 | 5,164 | 67 | 658 |
Needles – N fertilization treatments | 1,536 | 0 | 15 | 20 | 461 | 30 | 686 |
Total | 46,848 | 24,576 | Â | Â | 49,101 | Â | Â |