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Table 5 Pairwise comparison of white spruce consensus sequences related to the translationally controlled tumour proteins (TCTP). Nucleic acid identities were determined using the Smith-Waterman algorithm (water) available in the EMBOSS suite [71] in a 138 bp region of the 5' UTR immediately upstream of the first codon (ATG), (above the diagonal); and, along the complete sequence of the consensus sequences (under the diagonal). The diagonal shows the contig length.

From: Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters

  Sequence10076 Sequence10707 Sequence9531 Sequence7749 Sequence1882
Sequence10076 805 88/162 (54.3%) 54/84 (64.3%) 70/159 (44.0%) 83/144 (57.6%)
Sequence10707 761/890 (85.5%) 977 111/157 (70.7%) 71/147 (48.3%) 99/154 (64.3%)
Sequence9531 759/889 (85.4%) 925/1034 (89.5%) 1124 65/133 (48.9%) 101/159 (63.5%)
Sequence7749 515/659 (78.1%) 548/736 (74.5%) 596/938 (63.5%) 945 73/147 (49.7%)
Sequence1882 719/815 (88.2%) 742/823 (90.2%) 750/906 (82.8%) 523/687 (76.1%) 796