Table 5 Pairwise comparison of white spruce consensus sequences related to the translationally controlled tumour proteins (TCTP). Nucleic acid identities were determined using the Smith-Waterman algorithm (water) available in the EMBOSS suite [71] in a 138 bp region of the 5' UTR immediately upstream of the first codon (ATG), (above the diagonal); and, along the complete sequence of the consensus sequences (under the diagonal). The diagonal shows the contig length.
From: Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
| Â | Sequence10076 | Sequence10707 | Sequence9531 | Sequence7749 | Sequence1882 |
|---|---|---|---|---|---|
Sequence10076 | 805 | 88/162 (54.3%) | 54/84 (64.3%) | 70/159 (44.0%) | 83/144 (57.6%) |
Sequence10707 | 761/890 (85.5%) | 977 | 111/157 (70.7%) | 71/147 (48.3%) | 99/154 (64.3%) |
Sequence9531 | 759/889 (85.4%) | 925/1034 (89.5%) | 1124 | 65/133 (48.9%) | 101/159 (63.5%) |
Sequence7749 | 515/659 (78.1%) | 548/736 (74.5%) | 596/938 (63.5%) | 945 | 73/147 (49.7%) |
Sequence1882 | 719/815 (88.2%) | 742/823 (90.2%) | 750/906 (82.8%) | 523/687 (76.1%) | 796 |