Table 6 Pairwise comparison of white spruce consensus sequences related to the S-adenosylmethionine synthetase (SAMS). Nucleic acid identities were determined using the Smith-Waterman algorithm (water) available in the EMBOSS suite [71] in a 99 bp region of the 3' UTR immediately downstream the stop codon (above the diagonal) and along the complete sequence of the consensus sequences (under the diagonal). The diagonal shows the contig length.
From: Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
| Â | Sequence 10446 | Sequence 10482 | Sequence 10630 | Sequence 10683 | Sequence 10828 | Sequence 8600 | Sequence 9676 |
|---|---|---|---|---|---|---|---|
Sequence10446 | 1677 | 46/97 (47.4%) | 48/113 (42.5%) | 51/117 (43.6%) | 45/85 (52.9%) | 85/106 (80.2%) | 44/98 (44.9%) |
Sequence10482 | 1096/1607 (68.2%) | 1467 | 54/78 (69.2%) | 65/92 (70.7%) | 50/84 (59.5%) | 49/114 (43%) | 45/96 (46.9%) |
Sequence10630 | 1126/1641 (68.6%) | 1343/1557 (86.3%) | 1540 | 69/113 (61.1%) | 48/78 (61.5%) | 47/95 (49.5%) | 55/111 (49.5%) |
Sequence10683 | 1143/1711 (66.8%) | 1342/1521 (88.2%) | 1357/1582 (85.8%) | 1531 | 49/103 (47.6%) | 58/116 (50%) | 46/117 (39.3%) |
Sequence10828 | 1202/1814 (66.3%) | 1262/1534 (82.3%) | 1343/1714 (78.4%) | 1306/1604 (81.4%) | 1679 | 49/95 (51.6%) | 49/109 (45%) |
Sequence8600 | 1349/1691 (79.8%) | 1058/1536 (68.9%) | 1089/1532 (71.1%) | 1092/1583 (69%) | 1120/1656 (67.6%) | 1476 | 41/71 (57.7%) |
Sequence9676 | 1025/1418 (72.3%) | 1314/1459 (90.1%) | 1276/1397 (91.3%) | 1261/1381 (91.3%) | 1179/1369 (86.1%) | 1026/1462 (70.2%) | 1356 |