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Table 6 Pairwise comparison of white spruce consensus sequences related to the S-adenosylmethionine synthetase (SAMS). Nucleic acid identities were determined using the Smith-Waterman algorithm (water) available in the EMBOSS suite [71] in a 99 bp region of the 3' UTR immediately downstream the stop codon (above the diagonal) and along the complete sequence of the consensus sequences (under the diagonal). The diagonal shows the contig length.

From: Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters

  Sequence 10446 Sequence 10482 Sequence 10630 Sequence 10683 Sequence 10828 Sequence 8600 Sequence 9676
Sequence10446 1677 46/97 (47.4%) 48/113 (42.5%) 51/117 (43.6%) 45/85 (52.9%) 85/106 (80.2%) 44/98 (44.9%)
Sequence10482 1096/1607 (68.2%) 1467 54/78 (69.2%) 65/92 (70.7%) 50/84 (59.5%) 49/114 (43%) 45/96 (46.9%)
Sequence10630 1126/1641 (68.6%) 1343/1557 (86.3%) 1540 69/113 (61.1%) 48/78 (61.5%) 47/95 (49.5%) 55/111 (49.5%)
Sequence10683 1143/1711 (66.8%) 1342/1521 (88.2%) 1357/1582 (85.8%) 1531 49/103 (47.6%) 58/116 (50%) 46/117 (39.3%)
Sequence10828 1202/1814 (66.3%) 1262/1534 (82.3%) 1343/1714 (78.4%) 1306/1604 (81.4%) 1679 49/95 (51.6%) 49/109 (45%)
Sequence8600 1349/1691 (79.8%) 1058/1536 (68.9%) 1089/1532 (71.1%) 1092/1583 (69%) 1120/1656 (67.6%) 1476 41/71 (57.7%)
Sequence9676 1025/1418 (72.3%) 1314/1459 (90.1%) 1276/1397 (91.3%) 1261/1381 (91.3%) 1179/1369 (86.1%) 1026/1462 (70.2%) 1356