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Table 1 Comparison of the Affymetrix MPAM and SNiPer algorithms.

From: SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data

ALGORITHM

%NOCALLS

CONCORDANCEVS. MPAM

INHERITANCE ACCURACY

MPAM

5.22% ± 0.03%

------

99.94%

SNiPer

0.97% ± 1.27%

98.61% ± 0.21%

99.80%