A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish

BMC Genomics

Table 2 List of human MHC class II and extended class II (xII) region genes used against the zebrafish whole-genome assembly. Genes with the suffix "like" are either gene fragments and/or highly similar to their human counterparts. Genes not identified by sequence similarity searches are marked as not found (NF). The official gene nomenclature for zebrafish is shown in brackets.

MHC CLASS II REGION GENES
HUMAN			ZEBRAFISH
	name	accession	location	location	location	location
II	C6orf10	NM_006781	NF
II	BTNL2	NM_019602	NF
II	HLA-D*		8 [mhc2dab]	8 [mhc2daa]	19 [mhc2dcb-rs]	s_2399 [mhc2dfb]
			5 [mhc2-like]	NA14232 [mhc2dbb]	NA6696 [mhc2ddb]	NA6696 [mhc2-like]
			20 [mhc2-like]	15 [mhc2-like]
II	TAP2	NM_018833	19 [abcb3]	19 [abcb3l1]	19 [abcb3l2]
II	PSMB8	NM_004159	19 [psmb8]	19 [psmb10]	19 [psmb11]	19 [psmb9a]
			2 [psmb5]	s_1793 [psmb7]
II	TAP1	NM_000593	9 [tap1]
II	PSMB9	NM_002800	19 [psmb8]	19 [psmb10]	19 [psmb11]	19 [psmb9a]
			2 [psmb5]	s_1793 [psmb7]
II	BRD2	NM_005104	19 [brd2]	9 [brd2-like]	s_549 [brd3]	5 [zgc:77289]
			14 [brd8]	14 [brdt-like]	s_277 [brd4]
xII	COL11A2	NM_080679	19 [col11a2]	24 [col11a1]
xII	RXRB	NM_021976	17 [rxrb]	NA16779 [rxrb]	21 [rxra]	5 [rxra]
			9 [rxrg]
xII	SLC39A7	NM_006979	19 [ke4]
xII	HSD17B8	NM_014234	19 [fabgl]
xII	RING1	NM_002931	NF	2 [rnf2]
xII	VPS52	NM_022553	19 [vps52]
xII	RPS18	NM_022551	NA303 [rps18]
xII	B3GALT4	NM_003782	NF	22 [zgc:76904]	s_1722 [b3galt1]
xII	C6orf11	NM_005452	s_2182 [bing4]
xII	HKE2	NM_014260	14 [zgc:66282]	NA8827 [zgc:66282]
xII	RGL2	NM_004761	23 [rgl2]	NA14862 [rgl2-like]	NA7773 [zgc:77299]	NA12682 [ralgds]
xII	TAPBP	NM_003190	19 [tpsn]
xII	ZNF297	NM_005453	19 [znf297]
xII	DAXX	NM_001350	19 [daxx]
xII	LYPLA2L	CAB63783	19 [lypla2l-like]
xII	KIFC1	NM_002263	19 [kifc1]

ISSN: 1471-2164