Table 3 List of human MHC class III region genes used against the zebrafish whole-genome assembly. Genes with the suffix "like" are either gene fragments and/or highly similar to their human counterparts. Genes not identified by sequence similarity searches are marked as not found (NF). The official gene nomenclature for zebrafish is shown in brackets.
MHC CLASS III REGION GENES | |||||
|---|---|---|---|---|---|
HUMAN | ZEBRAFISH | ||||
name | accession | location | location | location | location |
BAT1 | NM_004640 | 19 [zgc:63773] | 16 [ddx39] | Â | Â |
ATP6V1G2 | NM_130463 | NF | 5 [atp6v1g1] | Â | Â |
NFKBIL1 | NM_005007 | NF | Â | Â | Â |
TNF | NM_000594 | 19 [tnf] | NA11949 [tnfa-like] | Â | Â |
LST1 | NM_007161 | NF | Â | Â | Â |
NCR3 | NM_147130 | NF | Â | Â | Â |
AIF1 | NM_001623 | NF | 5 [zgc:73179] | Â | Â |
BAT2 | NM_004638 | 19 [bat2-like] | Â | Â | Â |
BAT3 | NM_004639 | 1 [bat3] | 19 [bat3-like] | Â | Â |
APOM | NM_019101 | NF | Â | Â | Â |
C6orf47 | NM_021184 | NF | Â | Â | Â |
BAT4 | NM_033177 | s_339 [bat4-like] | Â | Â | Â |
CSNK2B | NM_001320 | 19 [ck2b] (X2) | 23 [ck2b] | Â | Â |
LY6G5B | NM_021221 | NF | Â | Â | Â |
LY6G5C | NM_025262 | NF | Â | Â | Â |
BAT5 | NM_021160 | NA9087 [bat5-like] | Â | Â | Â |
LY6G6D | NM_021246 | NF | Â | Â | Â |
LY6G6E | NM_024123 | NF | Â | Â | Â |
LY6G6C | NM_025261 | NF | Â | Â | Â |
C6orf25 | NM_025260 | NF | Â | Â | Â |
DDAH2 | NM_013974 | NF | 19 [ddah1] | Â | Â |
CLIC1 | NM_001288 | 18 [zgc:77538] | 14 [zgc:92762] | 16 [clica] | 17 [clic4] |
MSH5 | NM_002441 | 15 [msh5] | Â | Â | Â |
C6orf26 | NM_025259 | NF | Â | Â | Â |
C6orf27 | NM_025258 | 1 [c6orf27-like] | Â | Â | Â |
VARS2 | NM_006295 | 11 [vars2] | Â | Â | Â |
LSM2 | NM_021177 | 6 [smx5] | Â | Â | Â |
HSPA1A | NM_005345 | NA17761 [hsp70] | 3 [hsp70] (X3) | 8 [hsp70] | Â |
C6orf48 | NM_016947 | NF | Â | Â | Â |
NEU1 | NM_000434 | NA17767 [neu1] | Â | Â | Â |
C6orf29 | NM_032794 | NA17767 [zgc:64108] | Â | Â | Â |
BAT8 | NM_025256 | NA17767 [bat8] | Â | Â | Â |
ZBTB12 | NM_181842 | NA17767 [zbtb12] | Â | Â | Â |
BF/C2 | NM_001710 | 21 [bf] | NA17761 [bf] | Â | Â |
RDBP | NM_002904 | NA17761 [rdbp] | Â | Â | Â |
SKIV2L | NM_006929 | 19 [skiv2l] | NA17761 [skiv2l] | Â | Â |
DOM3Z | NM_032419 | NA17766 [dom3z] | Â | Â | Â |
STK19 | NM_004197 | 18 [stk19-like] | Â | Â | Â |
C4B | NM_000592 | 15 [c4] | 15 [a2m] | 22 [c3] | NA17328 [a2m] |
| Â | Â | NA14479 [c3] | Â | Â | Â |
CYP21A2 | NM_000500 | 6 [cyp21a2] | Â | Â | Â |
TNXB | NM_032470 | 16 [tnx-like] | 2 [tnw] | 2 [tnr] | 5 [tnc] |
CREBL1 | NM_004381 | NF | 20 [atf6-like] | Â | Â |
FKBPL | NM_022110 | NF | Â | Â | Â |
C6orf31 | NM_030651 | 19 [c6orf31-like] | Â | Â | Â |
PPT2 | NM_005155 | 19 [ppt2] | s_1796 [ppt2] | NA5816 [zgc:55621] | Â |
EGFL8 | NM_030652 | NF | Â | Â | Â |
AGPAT1 | NM_032741 | NF | 1 [agpat3] | 13 [agpat4] | Â |
RNF5 | NM_006913 | NF | Â | Â | Â |
AGER | NM_001136 | NF | Â | Â | Â |
PBX2 | NM_002586 | NA14559 [pbx1a] | 11 [pbx1a] | 18 [pbx3b] | NA11844 [pbxy] |
GPSM3 | NM_022107 | NF | Â | Â | Â |
NOTCH4 | NM_004557 | s_285 [notch3] | 5 [notch1] | NA15389 [notch2] | s_1523 [notch3] |