A class of models for analyzing GeneChip® gene expression analysis array data

BMC Genomics

Table 1 Estimated parameters for eight candidate genes from GPMs

Probe set ID	Y00291_at			L13738_at			D79990_at			M13666_at			X02158_rna1_at			X84002_at			L19605_at			M60503_at
Parameters	β	SE	Z	β	SE	Z	β	SE	Z	β	SE	Z	β	SE	Z	β	SE	Z	β	SE	Z	β	SE	Z
GPM-1 PM-IM	3.17	0.48	6.65	0.80	0.18	4.50	3.04	0.68	4.47	1.07	0.25	4.24	-1.07	0.25	-4.24	0.63	0.15	4.18	0.51	0.12	4.16	-2.05	0.50	-4.13
GPM-2 PM-IM	2.79	0.36	7.74	0.65	0.13	4.89	2.92	0.67	4.3	1.11	0.24	4.6	-0.92	0.24	-3.86	0.33	0.12	2.63	0.51	0.09	5.53	-1.56	0.35	-4.44
GPM-3 PM-IM	3.05	0.35	8.60	0.71	0.12	5.69	3.10	0.63	4.89	1.31	0.22	5.93	-1.40	0.25	-5.73	0.25	0.11	2.26	0.52	0.09	6.02	-2.25	0.38	-5.96

Estimated coefficients (β ), their standard errors (SE ) and standardized coefficients (Z ) for eight candidate genes from GPM-1 (using MAS 5.0 expression measure), GPM-2 and GPM-3 using PM-IM

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