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Table 2 BAC end sequences of the positive clones mapped on the C57BL/6J genome

From: Construction and characterization of a genomic BAC library for the Mus m. musculus mouse subspecies (PWD/Ph inbred strain)

Gene Probe position BAC clone/primer BES position Strand Insert size (bp)
      mapped PFGE
Mash chr7:130,672,998 327-5I/T7 chr7:130,587,753 + 132,317 145,000
   327-5I/SP6 chr7:130,720,069 -   
Ads chr12:35,152,780 262-11G/SP6 multiple hits   n.d. 105,000
   262-11G/T7 chr12:35,192,443 -   
   266-2E/SP6 chr12:35,090,782 + 109,399 115,000
   266-2E/T7 chr12:35,200,180 -   
Igf2r chr17:12,150,509 279-5I/SP6 chr17:12,057,702 + 125,000 120,000
   279-5I/T7 chr17:12,182,701 -   
   282-5D/T7 chr17:12,028,446 + 144,525 145,000
   282-5D/SP6 chr17:12,172,970 -   
   245-11P/SP6 chr17:12,000,500 + 186,822 195,000
   245-11P/T7 chr17:12,187,321 -   
Tbp chr17:14,324,440 297-2I/T7 chr17:14,291,556 + 147,925 145,000
   297-2I/SP6 chr17:14,439,480 -   
Usp26 chrX:44,101,113 293-21P/T7 chrX:44,086,068 + 184,994 190,000
   293-21P/SP6 chrX:44,271,061 -   
Xist chrX:94,885,652 269-9H/SP6 chrX:94,817,775 + 150,314 160,000
   269-9H/T7 chrX:94,968,088 -   
   255-3L/T7 chrX:94,756,622 + 134,724 145,000
   255-3L/SP6 chrX:94,891,345 -   
   271-12L/SP6 chrX:94,854,496 + 131,966 140,000
   271-12L/T7 chrX:94,986,461 -   
Tex13 chrX:130,816,302 257-22B/SP6 chrX:130,761,904 + 124,211 120,000
   257-22B/T7 chrX:130,886,114 -   
   322-4J/SP6 chrX:130,761,839 + 117,691 110,000
   322-4J/T7 chrX:130,879,529 -   
  1. BAC ends (BESs) of the positive clones identified on the membranes no. 6 and no. 7 were sequenced, mapped and aligned to the mouse genome (mm5 assembly, UCSC). The coordinates on the mouse genome are shown for the probes as well as for the ends of genomic inserts. An average insert size 140.8 kb was calculated from mapped positions and 141.2 kb was determined by pulsed-field gel electrophoresis (PFGE).