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Table 2 BLAT Results: TIGR Bt GI TCs vs. full-CDS bFLICs with identities > = 300

From: Characterization of 954 bovine full-CDS cDNA sequences

  A B
  No bFLIC TC membership requirement bFLIC required to be member in query TC
  933 total bFLICs in all alignments 855 total bFLICs in all alignments
Fractional coverage of bFLICs by any single TC Number of bFLICS Average Contig Length Number of bFLICS Average Contig Length
> = .95 414 1470 401 1474
< .95 672 1782 456 1865
< .90 639 1797 409 1909
< .80 615 1810 360 1964
< .50 531 1846 264 2081
< .25 389 2139 163 2484
< .20 97 2430 29 2664
< .15 29 2781 8 2920
  1. In order to quantify how well the TCs cover the bFLICs, the number of bFLICs matched by TCs at different fractional coverage levels was determined. Fractional coverage of a bFLIC by a TC = number of identities in the BLAT match/bFLIC length.