Table 3 Protein domain families over-represented in plant-associated proteobacteria.
From: Protein domains and architectural innovation in plant-associated Proteobacteria
Domain family | Expected number of proteins | Observed number of proteins | P | |
|---|---|---|---|---|
Pfam accesion | Pfam ID | Â | Â | Â |
PF00211 | Guanylate_cyc | 33.39 | 70 | 2.17E-008 |
PF00296 | Bac_luciferase | 46.36 | 81 | 2.56E-006 |
PF04828 | DUF636 | 36.58 | 65 | 1.40E-005 |
PF04679 | DNA_ligase_A_C | 17.65 | 38 | 1.76E-005 |
PF01068 | DNA_ligase_A_M | 24.03 | 47 | 2.18E-005 |
PF02738 | Ald_Xan_dh_C2 | 35.72 | 63 | 2.33E-005 |
PF03758 | SMP-30 | 19.35 | 40 | 2.63E-005 |
PF01638 | DUF24 | 37 | 64 | 3.51E-005 |
PF01757 | Acyl_transf_3 | 54.86 | 87 | 3.75E-005 |
PF00067 | p450 | 24.24 | 46 | 5.31E-005 |
PF02746 | MR_MLE_N | 50.18 | 80 | 6.30E-005 |
PF02894 | GFO_IDH_MocA_C | 66.35 | 100 | 6.97E-005 |
PF01799 | Fer2_2 | 31.26 | 55 | 7.69E-005 |
PF06169 | DUF982 | 11.06 | 26 | 8.88E-005 |
PF07536 | HWE_HK | 23.82 | 44 | 1.35E-004 |
PF01022 | HTH_5 | 68.47 | 101 | 1.38E-004 |
PF03573 | OprD | 14.03 | 30 | 1.41E-004 |
PF00656 | Peptidase_C14 | 14.89 | 31 | 1.73E-004 |
PF03459 | TOBE | 83.78 | 139 | 2.48E-004 |
PF02627 | CMD | 51.89 | 79 | 2.75E-004 |
PF01188 | MR_MLE | 56.78 | 85 | 2.79E-004 |
PF07506 | RepB | 10.84 | 24 | 3.81E-004 |
PF01261 | AP_endonuc_2 | 85.48 | 122 | 4.91E-004 |
PF00150 | Cellulase | 11.06 | 24 | 4.97E-004 |
PF01408 | GFO_IDH_MocA | 85.7 | 130 | 5.36E-004 |
PF00941 | FAD_binding_5 | 21.05 | 38 | 5.58E-004 |
PF01315 | Ald_Xan_dh_C | 29.35 | 49 | 5.60E-004 |
PF00353 | HemolysinCabind | 36.15 | 57 | 8.12E-004 |
PF06823 | DUF1236 | 8.93 | 20 | 9.64E-004 |