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Table 3 Protein domain families over-represented in plant-associated proteobacteria.

From: Protein domains and architectural innovation in plant-associated Proteobacteria

Domain family Expected number of proteins Observed number of proteins P
Pfam accesion Pfam ID    
PF00211 Guanylate_cyc 33.39 70 2.17E-008
PF00296 Bac_luciferase 46.36 81 2.56E-006
PF04828 DUF636 36.58 65 1.40E-005
PF04679 DNA_ligase_A_C 17.65 38 1.76E-005
PF01068 DNA_ligase_A_M 24.03 47 2.18E-005
PF02738 Ald_Xan_dh_C2 35.72 63 2.33E-005
PF03758 SMP-30 19.35 40 2.63E-005
PF01638 DUF24 37 64 3.51E-005
PF01757 Acyl_transf_3 54.86 87 3.75E-005
PF00067 p450 24.24 46 5.31E-005
PF02746 MR_MLE_N 50.18 80 6.30E-005
PF02894 GFO_IDH_MocA_C 66.35 100 6.97E-005
PF01799 Fer2_2 31.26 55 7.69E-005
PF06169 DUF982 11.06 26 8.88E-005
PF07536 HWE_HK 23.82 44 1.35E-004
PF01022 HTH_5 68.47 101 1.38E-004
PF03573 OprD 14.03 30 1.41E-004
PF00656 Peptidase_C14 14.89 31 1.73E-004
PF03459 TOBE 83.78 139 2.48E-004
PF02627 CMD 51.89 79 2.75E-004
PF01188 MR_MLE 56.78 85 2.79E-004
PF07506 RepB 10.84 24 3.81E-004
PF01261 AP_endonuc_2 85.48 122 4.91E-004
PF00150 Cellulase 11.06 24 4.97E-004
PF01408 GFO_IDH_MocA 85.7 130 5.36E-004
PF00941 FAD_binding_5 21.05 38 5.58E-004
PF01315 Ald_Xan_dh_C 29.35 49 5.60E-004
PF00353 HemolysinCabind 36.15 57 8.12E-004
PF06823 DUF1236 8.93 20 9.64E-004