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Table 3 Conserved Dynactin Subunits in Apicomplexans

From: Comparative genome analysis reveals a conserved family of actin-like proteins in apicomplexan parasites

  

Toxoplasma gondii(Tg)

plasmodium falciparum(Pf)

Crytosporidium parvam(Cp)

Dynactin Subunit

Pfam ID

Tg Candidatea

Top Matchb

E -value c

Pfam scored

Pf Candidatea

Top Matchb

E -value c

Pfam scored

Cp Candidatea

Top Matchb

E -value c

Pfam scored

Arp1 *

pfam00022

TgArp1 TgTwinScan_4250

GgArp1

1.00 × 10 -147

492

PfArp1 CAD48998

Gg Arp1

1.00 × 10-141

464

CpArp1 EAK87959

GgArp1

1.00 × 10 -131

437

Arp10/11 *

pfam00022

TgALP3 TgTwinScan_2515

Gg Arp10

8.00 × 10 -28

80.8

PfALP3 CAD51025

Dr Arp10

8.00 × 10 -05

-

CpALP3 EAK89329

GgArp10

9.00 × 10 -21

73.1

p62 e

pfam05502

TgTwinScan_5099

Hs p62

3.00 × 10 -09

62.8

AAN37118

Hs p62

5.00 × 10 -05

56.7

EAK88826

Hs p62

9.00 × 10 -21

101

p25 f

nd

TgTwinScan_4906

Gg p25

4.00 × 10 -29

 

CAD50982

Dd p25

2.00 × 10 -21

 

EAK87596

Dd p25

9.00 × 10 -18

 

p27 g

nd

TgTwinScan_1451

Sp p27

8.00 × 10 -05

 

CAD51191

Bt p27

0.009

 

EAK90307

Am p27

9.00 × 10 -08

 

CapZ α

pfam01267

AAU93918

At CapZ α

1.3

-

CAD51646

Dd CapZ α

4.00 × 10 -17

102

-

-

-

 

CapZ β

pfam01115

AAU93916

Dm CapZ β

2.00 × 10 -45

197

CAD51540

Dm CapZ β

4.00 × 10 -29

140

EAK88546

Dd CapZ β

2.00 × 10 -07

53.9

Dynamitin/p5O h

pfam04912

TgTwinScan_4110

Dr p5O

4.00 × 10 -10

62

CAD52583

XI p5O

1.00 × 10 -04

52.8

-

-

-

-

  1. * = see phylogenetic analysis for definition of apicomplexan candidates
  2. nd = not defined
  3. (-) = no significant match
  4. a = protein ID of candidate apicomplexan protein
  5. b = identifying protein found in reciprocal search of the NCBI database using the apicomplexan candidate as query
  6. c = E -value of the top match identifying protein in comparison to the apicomplexan candidate
  7. d = Pfam score as determined by BLASTP comparison to the CDD NCBI database
  8. e = protein sequences used to identify apicomplexan candidates : Hs AAH26323, Dm AAF59211, Ce AAC24257, Dd XP_641285
  9. f = protein sequences used to identify apicomplexan candidates: Hs Q9BTE1, Dm AAF34709, Sp XP_782293, Dd EAL68462
  10. g = protein sequences used to identify apicomplexan candidates : Hs AAH13175, Dm NP_609949, Ce NP_491116
  11. h = protein sequences used to identify apicomplexan candidates : Hs AAC50423, Dm AAF59034, Ce NP_498286, Dd XP_638093
  12. Am = Apis melliferous, At = Arabidopsis thaliana, Bt = Bos taurus, Ce = Caenorhabditis elegans, Dd = Dictyostelium discoideum, Dm = Drosophila melanogaster, Dr = Danio rerio, Hs = Homo sapiens, Gg = Gallus gallus, Sp = Strongylocentrotus purpuratus, XI = Xenopus laevis
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BMC Genomics

ISSN: 1471-2164

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