Table 1 List of positive SNP candidates for EMSA studies. The genes and the SNPs which were tested in this report are indicated in bold text. The name of the TF and the predicted consensus site from the transcription start site are indicated.
From: Identification of functional SNPs in the 5-prime flanking sequences of human genes
Gene Name /Ensembl ENSG | TF name (distance from start site) | SNP rs ID | Allele 1 | Allele 2 |
|---|---|---|---|---|
Beta-2 adrenergic receptor ENSG00000164272 | Nkx(-4257) | rs2082382 | ttcagtg | ttcggtg |
Gklf(-4216) | rs2082395 | aagtgagaag | aagtgagaaa | |
c-ETS(-1049) | rs1432622 | gatcct | gatctt | |
P2y purinoceptor 5 (p2y5) ENSG00000139679 | SAP-1(-149) | rs2233571 | agcggaaat | agtggaaat |
Anion exchange protein 2 ENSG00000164889 | Yin-Yang(-3480) | rs2069453 | gccatg | gccgtg |
c-ETS(-2988) | rs2069451 | tttccc | tgtccc | |
SPI-1(-2988) | rs2069451 | gggaaa | gggaca | |
SPI-B(-2990) | rs2069451 | atgggaa | atgggac | |
c-MYB_1(-1536) | rs2069442 | gggagttg | gggacttg | |
Nkx(-1537) | rs2069442 | tcaagtc | tcaactc | |
SP1(-1440) | rs2069441 | agggctggga | agagctggga | |
C-c chemokine receptor type 1 ENSG00000163823 | SPI-B(-117) | rs3181080 | acaagaa | actagaa |
SOX17(-118) | rs3181080 | tttcttgtc | tttctagtc | |
Frizzled 6 precursor (frizzled-6) ENSG00000164930 | deltaEF1(-629) | rs3758096 | caccta | aaccta |
Proteinase activated receptor 3 ENSG00000164220 | c-ETS(-32) | rs2069647 | catcct | cctcct |
deltaEF1(-31) | rs2069647 | ctcctt | atcctt | |
Chemokine (C-X-C) receptor 6 ENSG00000163819 | c-MYB_1(-469) | rs2234352 | tacagatg | tatagatg |
Thing1-E47(-469) | rs2234352 | catctgtaaa | catctataaa | |
5-hydroxytryptamine 1a receptor ENSG00000178394 | ARNT(-2174) | rs968554 | caagtg | caactg |
c-MYB_1(-2174) | rs968554 | tccagttg | tccacttg | |
deltaEF1(-2174) | rs968554 | cacttg | cagttg | |
n-MYC(-2174) | rs968554 | cacttg | cagttg | |
USF(-2174) | rs968554 | caagtgg | caactgg | |
USF(-2175) | rs968554 | cacttgg | cagttgg | |
ARNT(-2174) | rs968554 | cacttg | cagttg | |
deltaEF1(-2174) | rs968554 | caactg | caagtg | |
n-MYC(-2174) | rs968554 | caagtg | caactg | |
Muscarinic acetylcholine receptor M1 ENSG00000168539 | MZF_1-4(-148) | rs509813 | tggggg | tggcgg |
MZF_5-13(-149) | rs509813 | gtggggggag | gtggcgggag | |
MZF_1-4(-147) | rs509813 | gggggg | ggcggg | |
SP1(-147) | rs509813 | ggggggagga | ggcgggagga | |
Dopamine receptor D1a ENSG00000184845 | FREAC-4(-4311) | rs267412 | gtaaaccc | gtaagccc |
TCF11MafG(-4446) | rs267413 | actgac | acagac | |
Follicle stimulating hormone receptor ENSG00000170820 | HFH-3(-81) | rs2882225 | ggatgctttttt | ggatgctgtttt |
HFH-2(-82) | rs2882225 | gatgcttttttt | gatgctgttttt | |
c-ETS(-80) | rs2349718 | cttctt | cttttt | |
Gklf(-87) | rs2349718 | aaaaaaaaag | aaaaaaaaaa | |
SPI-1(-80) | rs2349718 | aagaag | aaaaag | |
5-hydroxytryptamine 2c receptor ENSG00000147246 | HFH-1(-1736) | rs3795182 | ccatgtttata | ccatatttata |
MEF2(-1734) | rs3795182 | atatttataa | atgtttataa | |
FREAC-4(-1734) | rs3795182 | ataaacat | ataaatat | |
c-ETS(-271) | rs3813928 | tatcct | taccct | |
MZF_1-4(-273) | rs3813928 | tgagga | tgaggg | |
SPI-B(-273) | rs3813928 | tgaggat | tgagggt | |
Bradykinin receptor 2 ENSG00000168398 | Ahr-ARNT(-535) | rs945032 | tgggtg | tgggta |
MZF_1-4(-80) | rs1800508 | tgggca | tgagca | |
AP2alpha(-79) | rs1800508 | gcccaggag | gctcaggag | |
TCF11-MafG(-61) | rs1799722 | aatgat | agtgat | |
Adenosine A3 receptor ENSG00000121933 | AP2alpha(-4276) | rs1538251 | gccctctgg | tccctctgg |
Alpha-1a adrenergic receptor ENSG00000120907 | c-ETS(-4898) | rs562843 | cttctt | cttatt |
SPI-1(-4898) | rs562843 | aagaag | aataag | |
Nkx(-4900) | rs562843 | ataagtt | agaagtt | |
C-c chemokine receptor type 2 ENSG00000121807 | TCF11MafG(-1823) | rs3092964 | catgcc | catacc |
Ahr-ARNT(-1825) | rs3092964 | tgcatg | tgcata | |
TCF11MafG(-1823) | rs3749462 | catgcc | catacc | |
Ahr-ARNT(-1825) | rs3749462 | tgcatg | tgcata | |
Putative chemokine receptor ENSG00000119594 | SPI-B(-86) | rs3825163 | tcaggaa | ccaggaa |
FREAC-4(-80) | rs3825163 | gtaaccat | ataaccat | |
TCF11-MafG(-81) | rs3825163 | gataac | ggtaac | |
Nkx(-161) | rs2256572 | ttatttg | ctatttg | |
S8(-163) | rs2256572 | tatta | tacta | |
TCF11MafG(-232) | rs590447 | gctgac | gccgac | |
deltaEF1(-230) | rs590447 | cagctt | cggctt | |
Calcitonin receptor ENSG00000004948 | TCF11MafG(-511) | rs2528521 | agtgac | agtggc |
Lectomedin-3 ENSG00000150471 | AP2alpha(-770) | rs905963 | gccccgagc | accccgagc |
SPI-1(-763) | rs905963 | gcgaac | gcgagc | |
c-ETS(-365) | rs1505666 | cctcct | ccttct | |
SPI-1(-366) | rs1505666 | gagaag | gaggag | |
MZF_1-4(-367) | rs1505666 | agagga | agagaa | |
Glucagon-like P2 ENSG00000065325 | SPI-B(-881) | rs1402655 | tgagaaa | tgataaa |
G protein-coupled receptor ENSG00000102865 | Yin-Yang(-118) | rs2240047 | gccatg | gccctg |
TCF11MafG(-118) | rs2240047 | catggc | cagggc | |
Gfi(-1575) | rs724615 | aaaatcacag | aaaatgacag |