Table 1 List of VACV-COP ORFs that were incorrectly classified.
From: Using purine skews to predict genes in AT-rich poxviruses
Major ORFS incorrectly classified as minor | ||||||
|---|---|---|---|---|---|---|
ORF name | ORF size (bp) | Serine content (%) | Aspartate content (%) | Glutamate content (%) | Purine content (%) | Explanation |
VACV-COP A13L | 210 | 11.43 | 1.43 | 2.86 | 48.82 | Small, membrane protein |
VACV-COP A14L | 270 | 11.11 | 3.33 | 0 | 45.79 | Small, membrane protein |
VACV-COP A14.5L | 159 | 7.55 | 1.89 | 1.89 | 44.45 | Small, membrane protein |
VACV-COP A38L | 831 | 7.94 | 3.97 | 2.53 | 47.25 | Membrane protein |
VACV-COP A43R | 582 | 10.31 | 5.67 | 1.55 | 51.11 | Membrane protein |
VACV-COP C3L | 789 | 13.31 | 4.18 | 3.8 | 52.27 | High Ser%, low Asp% and Glu% |
VACV-COP I5L | 237 | 5.06 | 2.53 | 1.27 | 49.58 | Small, membrane protein |
VACV-COP I6L | 1146 | 10.99 | 4.45 | 4.45 | 49.7 | High Ser%, low Asp% and Glu% |
Minor ORFs incorrectly classified as major | ||||||
ORF name | ORF size (bp) | Serine content (%) | Aspartate content (%) | Glutamate content (%) | Purine content (%) | Explanation |
VACV-COP A ORF G | 225 | 6.67 | 4 | 8 | 54.39 | Low Ser%, high Asp% and AG% |
VACV-COP A ORF T | 243 | 1.23 | 3.7 | 2.47 | 51.63 | Overlaps on same strand as major ORF |
VACV-COP B ORF G | 273 | 1.1 | 3.3 | 1.1 | 53.26 | Low Ser%, high AG% |
VACV-COP C ORF F | 273 | 1.1 | 3.3 | 1.1 | 53.26 | Low Ser%, high AG% |
VACV-COP E ORF D | 198 | 9.09 | 4.55 | 6.06 | 55.72 | High Asp%, Glu%, AG% |
VACV-COP F ORF A | 201 | 4.48 | 4.48 | 0 | 50.49 | Low Ser% |