Table 2 Transcripts identified as over-expressed in ERα (+) breast cancers commonly detected by cross-platforms comparison (SAGE and oligonucleotide microarrays).
From: Gene expression signature of estrogen receptor α status in breast cancer
Gene name | Locus Link ID | Fold change | Frequency | Gene name | Locus Link | Fold change | Frequency# |
|---|---|---|---|---|---|---|---|
TFF1* | 7031 | 51.4 | 15/18 (83%) | SULF2 | 55959 | 2.9 | 11/18 (61%) |
SYTL4* | 94121 | 28.0 | 15/18 (83%) | THBS4 | 7060 | 2.9 | 8/18 (44%) |
DUSP4 | 1846 | 14.7 | 14/18 (78%) | AZGP1 | 563 | 2.8 | 9/18 (50%) |
NAT1 | 9 | 11.7 | 15/18 (83%) | BBC3* | 27113 | 2.8 | 12/18 (67%) |
ECM1* | 1893 | 10.1 | 13/18 (72%) | NET7* | 23555 | 2.8 | 10/18 (55%) |
KIAA0882 | 23158 | 10.1 | 18/18 (100%) | NET6 | 27075 | 2.8 | 12/18 (67%) |
JDP1 | 56521 | 10.0 | 12/18 (67%) | TRAF5 | 7188 | 2.8 | 9/18 (50%) |
ESR1 | 2099 | 9.8 | 18/18 (100%) | BTG2 | 7832 | 2.7 | 9/18 (50%) |
HDGFRP3 | 50810 | 9.8 | 12/18 (67%) | RNF123* | 63891 | 2.7 | 11/18 (61%) |
TCEAL1 | 9338 | 9.8 | 13/18 (72%) | CHAD* | 1101 | 2.6 | 12/18 (67%) |
TSPAN1* | 10103 | 9.5 | 15/18 (83%) | CSNK1A1 | 1452 | 2.6 | 14/18 (78%) |
C20orf103* | 24141 | 9.3 | 10/18 (55%) | EVL | 51466 | 2.6 | 12/18 (67%) |
MYLIP | 29116 | 9.3 | 11/18 (61%) | HIST1H2BD | 3017 | 2.6 | 10/18 (55%) |
ABCA3 | 21 | 8.9 | 10/18 (55%) | SUSD3 | 203328 | 2.6 | 9/18 (50%) |
SEC14L2 | 23541 | 8.7 | 9/18 (50%) | PLAT* | 5327 | 2.6 | 8/18 (44%) |
ANXA9* | 8416 | 8.4 | 10/18 (55%) | RARRES3* | 5920 | 2.6 | 11/18 (61%) |
KCTD3 | 51133 | 8.4 | 17/18 (94%) | SH3BGRL* | 6451 | 2.6 | 8/18 (44%) |
SCUBE2 | 57758 | 7.5 | 14/18 (78%) | TPBG* | 7162 | 2.6 | 9/18 (50%) |
ITGBL1 | 9358 | 7.1 | 8/18 (44%) | UGCG | 7357 | 2.6 | 11/18 (61%) |
C14orf168 | 83544 | 6.7 | 6/18 (33%) | CELSR2* | 1952 | 2.5 | 8/18 (44%) |
FBP1 | 2203 | 6.7 | 14/18 (78%) | CRIM1 | 51232 | 2.5 | 11/18 (61%) |
MYB | 4602 | 6.7 | 14/18 (78%) | FLJ90798* | 219654 | 2.5 | 9/18 (50%) |
RARA* | 5914 | 6.7 | 12/18 (67%) | KIF12 | 113220 | 2.5 | 7/18 (39%) |
CaMKIINα | 55450 | 6.3 | 18/18 (100%) | LRIG1 | 26018 | 2.5 | 9/18 (50%) |
AR* | 367 | 6.2 | 10/18 (55%) | LRP2* | 4036 | 2.5 | 10/18 (55%) |
ZNF552 | 79818 | 6.2 | 16/18 (89%) | PHF15* | 23338 | 2.5 | 12/18 (67%) |
MIPEP* | 4285 | 6.0 | 14/18 (78%) | HSMNP1 | 55861 | 2.4 | 8/18 (44%) |
BAI2 | 576 | 5.3 | 15/18 (83%) | LOC123169 | 123169 | 2.4 | 12/18 (67%) |
DP1L1 | 92840 | 5.3 | 15/18 (83%) | PINK1* | 65018 | 2.4 | 11/18 (61%) |
VAV3 | 10451 | 5.3 | 12/18 (67%) | PRKAR2B | 5577 | 2.4 | 7/18 (39%) |
KIAA0089 | 23171 | 5.2 | 17/18 (94%) | TJP3* | 27134 | 2.4 | 11/18 (61%) |
GATA3 | 2625 | 5.1 | 15/18 (83%) | CCND1 | 595 | 2.3 | 9/18 (50%) |
QDPR | 5860 | 5.1 | 11/18 (61%) | CYBRD1 | 79901 | 2.3 | 10/18 (55%) |
C1orf21 | 81563 | 4.9 | 11/18 (61%) | KRT18 | 3875 | 2.3 | 10/18 (55%) |
KIAA1143 | 57456 | 4.9 | 7/18 (39%) | PURA | 5813 | 2.3 | 9/18 (50%) |
OIP106 | 22906 | 4.9 | 16/18 (89%) | SREBF1* | 6720 | 2.3 | 10/18 (55%) |
AGR2 | 10551 | 4.6 | 10/18 (55%) | CYB5R1 | 51706 | 2.2 | 6/18 (33%) |
MGC4251 | 84336 | 4.6 | 13/18 (72%) | DLG3* | 1741 | 2.2 | 9/18 (50%) |
FER1L3 | 26509 | 4.4 | 10/18 (55%) | EEF1A2 | 1917 | 2.2 | 11/18 (61%) |
C4A | 720 | 4.1 | 11/18 (61%) | GSTZ1 | 2954 | 2.2 | 9/18 (50%) |
CRIP2 | 1397 | 4.0 | 15/18 (83%) | LOC159090 | 159090 | 2.2 | 6/18 (33%) |
NTN4 | 59277 | 4.0 | 10/18 (55%) | MGC11242* | 79170 | 2.2 | 10/18 (55%) |
GJA1 | 2697 | 3.8 | 11/18 (61%) | MGC18216* | 145815 | 2.2 | 8/18 (44%) |
CGI-111* | 51015 | 3.7 | 14/18 (78%) | NEIL1 | 79661 | 2.2 | 6/18 (33%) |
CROT* | 54677 | 3.6 | 15/18 (83%) | XBP1* | 7494 | 2.2 | 8/18 (44%) |
DACH | 1602 | 3.6 | 13/18 (72%) | IRX5 | 10265 | 2.1 | 8/18 (44%) |
DKFZP564D172 | 83989 | 3.6 | 10/18 (55%) | RAB31 | 11031 | 2.1 | 9/18 (50%) |
FGD3 | 89846 | 3.6 | 10/18 (55%) | SSBP2 | 23635 | 2.1 | 7/18 (39%) |
RNASE4* | 6038 | 3.6 | 12/18 (67%) | TGFB3 | 7043 | 2.1 | 8/18 (44%) |
GLUL* | 2752 | 3.3 | 11/18 (61%) | BMPR1B | 658 | 2.0 | 7/18 (39%) |
FOXA1 | 3169 | 3.2 | 10/18 (55%) | FLJ21174 | 79921 | 2.0 | 6/18 (33%) |
MGC7036 | 196383 | 3.2 | 14/18 (78%) | FLJ22386 | 79641 | 2.0 | 7/18 (39%) |
MUC1* | 4582 | 3.2 | 12/18 (67%) | HSPB1* | 3315 | 2.0 | 6/18 (33%) |
NAV1 | 89796 | 3.1 | 13/18 (72%) | IGFBP4* | 3487 | 2.0 | 8/18 (44%) |
RPLP1* | 6176 | 3.1 | 12/18 (67%) | MGC15737* | 85012 | 2.0 | 8/18 (44%) |
ALCAM | 214 | 2.9 | 9/18 (50%) | SPARCL1 | 8404 | 2.0 | 9/18 (50%) |
HSD17B4* | 3295 | 2.9 | 13/18 (72%) | STARD10 * | 10809 | 2.0 | 7/18 (39%) |