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Table 1 Summary of mouse PSG nomenclature and sequence accession numbers

From: Structure and evolution of the mouse pregnancy-specific glycoprotein (Psg) gene locus

Current Name

Previous Names

Accession Numbera

Commentb

Psg16

bCEA

AC148976.2 (RC 40000–60000)

predicted CDS: join (1878–1941, 4115–4462, 7291–7650, 8750–9109, 11758–12041); bCEA is a splice variant of Psg16

Psg17

Cea2, mmCGM5

NM_007677

 

Psg18

Cea3, mmCGM6

NM_011963

 

Psg19

Cea4

NM_011964

 

Psg20

Cea7

AC079497.1 (113793–127892)

predicted CDS: join (1770–1836, 2989–3345, 4997–5356, 6587–6937, 13114–13397)

Psg21

Cea8

NM_027403

 

Psg22

Cea9

NM_001004152.1

 

Psg23

Cea11

NM_020261

 

Psg24

Cea12

AC079526 (115000–131000)

predicted CDS: join (1648–1696, 2771–3130, 5965–6324, 9351–9710, 10943–11302, 12844–13191, 14196–14479)

Psg25

Cea13

NW_000292.1 (RC 890000–910000)

predicted CDS: join (4905–4968, 7121–7480, 10406–10765, 11988–12347, 15508–15791)

Psg26

Cea14

join (CAAA01217140.1 {RC 1–6315}, CAAA01213459.1 {557–4715}, CAAA01175422.1 {155–2891})

predicted CDS: join (2148–2211, 3292–3651, 5836–6195, 7507–7866, 10823–11106)

Psg27

Cea15

AC087156.1 (RC 139366–153050)

predicted CDS: join (240–303, 2037–2393, 5271–5630, 6669–7028, 10039–10322)

Psg28

Cea16

NM_054063

 

Psg29

Cea17

AC079526 (183285–194009)

predicted CDS: join (1459–1522, 2658–3005, 6275–6634, 8128–8487, 9428–9700)

Psg30

 

XM_145406

GNOMON prediction in NCBI

Psg31

 

AC134475.3 (10000–70000)

predicted CDS: join (3923–3986, 5262–5621, 19366–19725, 34382–34741, 36822–37172, 40760–41119, 42413–42763, 47310–47669, 49090–49443, 50473–50756)

Psg32

Psg-ps1

XR_000250

GNOMON prediction in NCBI

  1. a Where nucleotide start and end positions are shown in parenthesis after accession numbers, they refer to the start and end positions of the genomic sequence excerpt (encompassing the PSG exons) that is included in Additional file 1. RC indicates that the sequence in Additional file 1 is the reverse complement. b Where we have predicted the full CDS of a PSG (based on common structure and splice sites), the numbers shown refer to exon start and end positions within the excerpted sequence included in Additional file 1.