Skip to main content

Table 1 Comparison of Functional Clusters in Three Tissue Specific or Enriched EST Pools*

From: Comprehensive in silico functional specification of mouse retina transcripts

 

Retina

Lung

Cerebellum

GO:0007154 cell communication (total gene numbers)

36

8

16

GO:0009605 response to external stimulus

19

1

0

   GO:0009581 perception of external stimulus

18

0

0

      GO:0009628 response to abiotic stimulus

18

0

0

         GO:0009314 radiation response

18

0

0

            GO:0009416 light response

18

0

0

         GO:0009582 perception of abiotic stimulus

18

0

0

            GO:0009583 perception of light

18

0

0

            GO:0009591 perception of mechanical stimulus

1

0

0

            GO:0009592 perception of sound

1

0

0

      GO:0007600 sensory perception

17

0

0

         GO:0007601 vision

17

0

0

         GO:0007605 hearing

1

0

0

         GO:0007609 mechanosensory perception

1

0

0

   GO:0009607 response to biotic stimulus

2

0

0

GO:0007155 cell adhesion

4

2

3

   GO:0016337 cell-cell adhesion

1

0

1

GO:0007165 signal transduction

22

4

9

   GO:0007166 cell surface receptor linked signal transduction

10

3

4

      GO:0007167 enzyme linked receptor protein signaling pathway

1

0

0

      GO:0007186 G-protein coupled receptor protein signaling pathway

8

0

3

         GO:0007187 G-protein signaling, coupled to cyclic nucleotide second messenger

1

0

1

         GO:0008277 regulation of G-protein coupled receptor protein signaling pathway

1

0

0

         GO:0007212 dopamine receptor signaling pathway

0

0

1

         GO:0007214 gamma-amino butyric acid signaling pathway

0

0

1

      GO:0016055 Wnt receptor signaling pathway

1

3

1

         GO:0007223 frizzled-2 receptor signaling pathway

0

3

0

   GO:0007242 intracellular signaling cascade

8

0

4

      GO:0019932 second-messenger-mediated signaling

1

0

1

      GO:0007243 protein kinase cascade

1

0

0

      GO:0007264 small GTPase mediated signal transduction

1

0

0

GO:0007267 cell-cell signaling

0

3

5

   GO:0019226 transmission of nerve impulse

0

0

4

      GO:0007268 synaptic transmission

0

0

4

         GO:0001505 neurotransmitter maintenance

0

0

1

GO:0008037 cell recognition

1

1

0

  1. * Cell communication category is used for this table. Tissue specific or enriched EST pools are under condition of 66% concentrated in individual libraries and at least three EST copies. There are no overlap of genes among each libraries.