Skip to main content

Table 2 "Commercial Wine Strain Signature" Gene Lista

From: Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures

Sig. amplified in at least 3 strains

 

Montrachet

French Red

Champagne

Prise de Mousse

YAR066W

 

0.84

1.43

0.62

0.19

YAR068W

 

1.05

1.67

0.91

0.52

YAR069C

 

1.11

1.57

1.09

0.59

YAR070C

 

1.14

1.62

1.16

0.63

YAR071W

PHO11

1.01

1.37

1.26

0.57

YAR073W

IMD1

0.99

1.41

1.34

0.56

YAR075W

 

0.98

1.47

1.46

0.56

YPL276W

 

0.59

1.36

1.64

0.75

YPL275W

FDH2

0.63

1.39

1.68

0.78

YPL274W

SAM3

0.58

1.06

1.31

0.66

YPL273W

SAM4

0.52

0.81

1.04

0.57

YPL272C

 

0.49

0.59

0.79

0.47

Sig. depleted in at least 3 strains

 

Montrachet

French Red

Champagne

Prise de Mousse

YAR007C

RFA1

-0.44

-0.73

-0.80

-0.31

YAR008W

SEN34

-1.05

-1.53

-1.31

-0.69

YAR014C

BUD14

-1.03

-1.25

-0.99

-0.65

YAR015W

ADE1

-0.54

-0.63

-0.64

-0.38

YBL007C

SLA1

-0.51

-0.61

-0.81

-0.39

YBL006C

LDB7

-0.86

-0.99

-1.02

-0.66

YBL005W

PDR3

-0.88

-1.07

-1.10

-0.67

YBR013C

 

-0.97

-1.58

-1.04

-0.45

YHR052W

CIC1

-0.39

-0.89

-1.40

-0.78

YHR053C

CUP1-1

-0.46

-1.32

-1.91

-1.07

YHR054C

 

-0.56

-1.65

-2.16

-1.29

YHR055C

CUP1-2

-0.56

-1.43

-1.98

-1.26

YHR056C

RSC30

-0.49

-1.10

-1.52

-0.96

YJR024C

 

-0.59

-0.62

-0.49

-0.30

YJR025C

BNA1

-0.91

-1.13

-0.84

-0.53

YJR026W

 

-1.47

-1.92

-1.41

-0.90

YJR030C

 

-0.95

-1.65

-1.32

-0.67

YJR031C

GEA1

-0.41

-0.90

-0.78

-0.32

YJR032W

CPR7

-0.16

-0.31

-0.39

-0.15

YJR033C

RAV1

-0.14

-0.32

-0.39

-0.11

YML047C

PRM6

-0.46

-0.89

-0.91

-0.25

YML046W

PRP39

-0.51

-1.16

-1.19

-0.31

YML043C

RRN11

-0.49

-0.99

-1.05

-0.33

YML042W

CAT2

-0.83

-1.33

-1.16

-0.51

YML041C

VPS71

-0.93

-1.35

-1.18

-0.58

YML038C

YMD8

-0.84

-1.39

-1.16

-0.46

YML037C

 

-0.47

-0.97

-0.93

-0.23

YMR043W

MCM1

-0.30

-0.28

-0.30

-0.23

YMR044W

IOC4

-0.81

-0.98

-0.82

-0.59

YMR046W-A

 

-1.14

-1.58

-1.29

-0.78

YMR047C

NUP116

-0.70

-0.96

-0.88

-0.56

YMR048W

CSM3

-0.69

-0.89

-0.75

-0.46

YMR049C

ERB1

-1.07

-1.45

-1.03

-0.66

YMR052W

FAR3

-1.17

-1.87

-1.28

-0.63

YMR052C-A

 

-0.69

-1.26

-0.89

-0.36

YOL165C

AAD15

-1.09

-1.03

-0.74

-0.80

YOL164W

 

-1.33

-1.24

-0.96

-0.80

  1. aThe data shown in this table are the actual mean log 2 (R/G) ratios for each gene, calculated by averaging the values from the six arrays (duplicate arrays of each of the three isolates of each strain) hybridized per wine strain. This list represents the wine-specific subset of the total set of genes with significant copy number changes, as described in the text. Values shown in bold text were determined by the CGH-Miner program to be significantly depleted or amplified as indicated. Values not significantly depleted or amplified are shown in non-bold italicized text.