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Table 2 "Commercial Wine Strain Signature" Gene Lista

From: Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures

Sig. amplified in at least 3 strains   Montrachet French Red Champagne Prise de Mousse
YAR066W   0.84 1.43 0.62 0.19
YAR068W   1.05 1.67 0.91 0.52
YAR069C   1.11 1.57 1.09 0.59
YAR070C   1.14 1.62 1.16 0.63
YAR071W PHO11 1.01 1.37 1.26 0.57
YAR073W IMD1 0.99 1.41 1.34 0.56
YAR075W   0.98 1.47 1.46 0.56
YPL276W   0.59 1.36 1.64 0.75
YPL275W FDH2 0.63 1.39 1.68 0.78
YPL274W SAM3 0.58 1.06 1.31 0.66
YPL273W SAM4 0.52 0.81 1.04 0.57
YPL272C   0.49 0.59 0.79 0.47
Sig. depleted in at least 3 strains   Montrachet French Red Champagne Prise de Mousse
YAR007C RFA1 -0.44 -0.73 -0.80 -0.31
YAR008W SEN34 -1.05 -1.53 -1.31 -0.69
YAR014C BUD14 -1.03 -1.25 -0.99 -0.65
YAR015W ADE1 -0.54 -0.63 -0.64 -0.38
YBL007C SLA1 -0.51 -0.61 -0.81 -0.39
YBL006C LDB7 -0.86 -0.99 -1.02 -0.66
YBL005W PDR3 -0.88 -1.07 -1.10 -0.67
YBR013C   -0.97 -1.58 -1.04 -0.45
YHR052W CIC1 -0.39 -0.89 -1.40 -0.78
YHR053C CUP1-1 -0.46 -1.32 -1.91 -1.07
YHR054C   -0.56 -1.65 -2.16 -1.29
YHR055C CUP1-2 -0.56 -1.43 -1.98 -1.26
YHR056C RSC30 -0.49 -1.10 -1.52 -0.96
YJR024C   -0.59 -0.62 -0.49 -0.30
YJR025C BNA1 -0.91 -1.13 -0.84 -0.53
YJR026W   -1.47 -1.92 -1.41 -0.90
YJR030C   -0.95 -1.65 -1.32 -0.67
YJR031C GEA1 -0.41 -0.90 -0.78 -0.32
YJR032W CPR7 -0.16 -0.31 -0.39 -0.15
YJR033C RAV1 -0.14 -0.32 -0.39 -0.11
YML047C PRM6 -0.46 -0.89 -0.91 -0.25
YML046W PRP39 -0.51 -1.16 -1.19 -0.31
YML043C RRN11 -0.49 -0.99 -1.05 -0.33
YML042W CAT2 -0.83 -1.33 -1.16 -0.51
YML041C VPS71 -0.93 -1.35 -1.18 -0.58
YML038C YMD8 -0.84 -1.39 -1.16 -0.46
YML037C   -0.47 -0.97 -0.93 -0.23
YMR043W MCM1 -0.30 -0.28 -0.30 -0.23
YMR044W IOC4 -0.81 -0.98 -0.82 -0.59
YMR046W-A   -1.14 -1.58 -1.29 -0.78
YMR047C NUP116 -0.70 -0.96 -0.88 -0.56
YMR048W CSM3 -0.69 -0.89 -0.75 -0.46
YMR049C ERB1 -1.07 -1.45 -1.03 -0.66
YMR052W FAR3 -1.17 -1.87 -1.28 -0.63
YMR052C-A   -0.69 -1.26 -0.89 -0.36
YOL165C AAD15 -1.09 -1.03 -0.74 -0.80
YOL164W   -1.33 -1.24 -0.96 -0.80
  1. aThe data shown in this table are the actual mean log 2 (R/G) ratios for each gene, calculated by averaging the values from the six arrays (duplicate arrays of each of the three isolates of each strain) hybridized per wine strain. This list represents the wine-specific subset of the total set of genes with significant copy number changes, as described in the text. Values shown in bold text were determined by the CGH-Miner program to be significantly depleted or amplified as indicated. Values not significantly depleted or amplified are shown in non-bold italicized text.