Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss)

Rexroad, Caird E; Rodriguez, Maria F; Coulibaly, Issa; Gharbi, Karim; Danzmann, Roy G; DeKoning, Jenefer; Phillips, Ruth; Palti, Yniv

doi:10.1186/1471-2164-6-54

Table 1 Cross-species amplification. Cross-species amplification allele size range information (bp) for microsatellite markers generated from rainbow trout ESTs

From: Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss)

Locus	Artic Char	Brook Trout	Atlantic Salmon	Brown Trout	Chinook Salmon	Coho Salmon	Sockeye Salmon	Cutthroat Trout
OMM5000	253–255	260–294	256	239–254	250–260	256	251–263	240–252
OMM5001	87	89	87	85	97	89	97–109	123–151
OMM5002	142–155	-	165–265	336–346	274–282	139–151	139–151	277
OMM5003	177	176–179	173	179–183	179	168–184	173–186	176–181
OMM5004	187	189	185–187	187	187	150–164	193	189–193
OMM5005	201–203	195–202	219	196–207	186–187	189	191	200–204
OMM5006	-	225–231	-	205–245	203	207–209	201	211–236
OMM5007	162–167	182–187	181–192	166	170–176	180–199	156–170	147–163
OMM5008	259	247	223–255	253–261	246–95	227–252	232	236–254
OMM5009	247	335–363	-	266	279–283	410	-	303–331
OMM5010	288–334	-	346–370	350–358	305–332	341–346	294–297	362
OMM5011	214–248	217–248	213–248	214–233	224–244	227–247	228–249	224–246
OMM5012	170–188	202–208	186	199–201	174–184	175–190	196–223	169–187
OMM5013	-	107	98	98–111	111–135	96–220	126	102–187
OMM5014	-	-	-	201–208	185–202	181–198	-	230–262
OMM5015	228	228	228	228	228	228	228	228
OMM5016	239	-	239	239	198	249–311	189	231–236
OMM5017	203–234	195–200	188–200	208–256	217–237	190–201	193	184–209
OMM5018	192	215–231	182–199	198	184–192	-	-	186–215
OMM5019	298	256–268	269–335	298–321	269–279	272–275	-	272–282
OMM5020	262	262	262–275	262	256–259	255–258	256–261	261–263
OMM5023	131	131	122	122	130–136	122	122	126–142
OMM5024	198	202	170	194–195	209–230	-	-	212–214
OMM5025	154	152	160	160	186–188	158	164	160
OMM5029	210–214	209–227	192–211	193–215	208	207–213	210	203–228
OMM5030	135–187	135–137	140–187	137–139	129–141	150–164	129–141	141–155
OMM5031	145	143	102–144	129–144	142–155	136	142–144	140
OMM5032	198	-	178	216–218	191–201	159	175–179	179–187
OMM5033	284	-	274–280	225	-	243	254–279	260–295
OMM5034	239–287	264	238–240	238–263	239–275	236–269	236–267	246–269
OMM5037	-	266	262–268	260–293	251	254–281	264–272	260–285
OMM5039	284	280	274–280	268	248–286	243–308	282–286	260
OMM5041	168	185–187	172	170	170–173	183–187	132	132–189
OMM5042	133	140	-	127–137	122	-	-	-
OMM5043	122	122	126	114–128	–	112–114	112–122	112–131
OMM5044	206	199	-	230	242	-	-	199–217
OMM5047	-	-	317–328	245–251	257–258	261	190	257–263
OMM5050	242	247–249	251	240	243	245–247	246–248	251–261
OMM5051	174–192	190	179	201–218	212–214	190–191	-	195–206
OMM5053	134–198	-	-	-	122	248	202	228–237
OMM5054	172–240	171–265	161–240	172–241	171–240	171–265	172–241	162–278
OMM5055	217–219	190–220	190–212	190–212	221	225–243	221	219
OMM5056	254–280	268–299	-	196	186	282–319	-	218–253
OMM5058	-	-	216–219	239–244	198–204	192	231–235	194–209
OMM5059	151	-	157	145–172	134	124–135	121–127	126–136
OMM5060	105–164	165	-	160	164	164	164	105–164
OMM5061	400	354–358	291–293	274–282	275	274	262	274–278
OMM5062	229	225	200	192–212	223–233	212–231	221–241	222–240
OMM5063	-	148–195	207–243	203–237	150–154	237–282	154–182	178–220
OMM5064	272–274	92–110	276–283	274	290–319	283–285	279	95–286
OMM5067	153–186	153–164	185–187	171–185	153–186	153–164	171–192	153–187
OMM5072	160–164	161–167	171	170–187	146–158	158–164	158–167	164–170
OMM5074	306–344	247–260	242	238–244	245–253	232	228–233	241–244
OMM5075	214	206–208	-	189–191	186	192–198	194	208–229
OMM5077	368	372	377	383	373	377–380	365	334–354
OMM5088	174	168	-	153	159–161	153	168	159–174
OMM5089	-	-	134–167	-	154–161	132–140	134–146	-
OMM5090	153	152–255	153	249–255	153–269	249–255	153–255	239–248
OMM5091	276	201–210	178	201–205	221–262	368	223–244	265–283
OMM5092	161	161	186	186	202–208	192–217	-	-
OMM5093	285	285	285	285	285	285	285	285
OMM5099	244	243	228	219–234	278–296	260–268	214–254	213–260
OMM5100	137–185	-	182	138–143	173	-	160–173	167–201
OMM5106	358–388	328–353	260–271	261	306–322	361–395	257–274	273–318
OMM5107	258–264	255	250–254	264	-	254	255	-
OMM5108	265	251	265–271	256	263–292	260–262	251–271	256–267
OMM5109	256	254–256	256–271	260–263	256	254–256	260–262	262–271
OMM5112	194	198	194–218	196	193–202	189–196	189	193–206
OMM5113	-	320–368	-	274–320	-	286–304	-	243–288
OMM5117	135–142	138	142	125–140	138	125–140	138	137–154
OMM5121	230	228–230	156–173	166–176	166–267	178–230	173–175	197–222
OMM5124	271–281	271–277	-	272–273	258	266	269	280
OMM5125	256	262–264	254	250–252	256–277	250–260	256–260	256–260
OMM5126	295–299	286	295–299	286–290	286	286–291	286	286–307
% Amp.	87	83	83	97	94	93	85	94

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ISSN: 1471-2164

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