Investigating hookworm genomes by comparative analysis of two Ancylostoma species

Mitreva, Makedonka; McCarter, James P; Arasu, Prema; Hawdon, John; Martin, John; Dante, Mike; Wylie, Todd; Xu, Jian; Stajich, Jason E; Kapulkin, Wadim; Clifton, Sandra W; Waterston, Robert H; Wilson, Richard K

doi:10.1186/1471-2164-6-58

BMC Genomics

Table 5 The most abundantly represented transcripts in the A. caninum cDNA libraries

From: Investigating hookworm genomes by comparative analysis of two Ancylostoma species

					non-redundant GenBank
A. caninum cluster id	ESTs per cluster	ESTs from library				Accession		C. elegans gene
		iL3	taL3	ssL3	Best identity descriptor	SW / TR^a	E-value	Wormpep97^b
AC00932.cl	203	186	0	17	Ancylostoma duodenale cytochrome oxidase subunit I	CAD10437	2e – 304	C06G4.2b
AC00471.cl	120	2	0	118	C. elegans CMP-sialic acid transporter	O02345	2e – 83	ZK896.9^b
AC00048.cl	114	100	11	3	C. elegans hsp-12.6 alpha-B-crystallin	Q20165	6e – 40	F38E11.2^b
AC01032.cl	104	104	0	0	Ancylostoma duodenale cytochrome oxidase subunit II	AAL50814	1e – 09	-
AC01031.cl	93	90	0	3	Ancylostoma duodenale cytochrome oxidase subunit III	CAD10435	2e – 143	-
AC00807.cl	69	4	2	63	Necator americanus ancylostoma secreted protein 1 precursor	AAD13340	3e – 28	F33A8.2
AC00205.cl	65	51	1	13	Ancylostoma duodenale COX2, cytochrome c oxidase subunit II	NP_579953	4e – 125	F26E4.12
AC00967.cl	54	9	0	45	Ancylostoma ceylanicum cathepsin D-like aspartic protease	AAO22152	8e – 174	R12H7.2
AC00134.cl	44	44	0	0	C. elegans putative protein, nematode specific	NP_497272	9e – 53	K02F3.9^b
AC01029.cl	39	37	2	0	C. elegans stress associated endoplasmic reticulum protein	NP_510604	9e – 37	F59F4.2^b
AC00137.cl	38	37	0	1	C. elegans RNA recognition motif	CAB03222	4e – 35	R06C1.4^b
AC00023.cl	38	36	0	2	C. elegans rpl-2 Ribosomal Proteins L2	Q9XVF7	3e – 148	B0250.1^b
AC00060.cl	36	36	0	0	Ancylostoma caninum secreted protein ASP-2 precursor	AAC35986	2e – 134	F11C7.3b
AC01400.cl	32	1	0	31	C. elegans ham-2 zinc finger protein	NP_508781	1e – 20	C07A12.1^b
AC00976.cl	32	29	0	3	Tetrahymena pigmentosa metallothionein MT-2	AAL87687	6e – 12	K11G9.6
AC00193.cl	31	7	0	24	Pisum sativum putative senescence-associated protein	BAB33421	2e – 61	F58H1.7
AC00931.cl	29	6	0	23	novel	-	-	-
AC00079.cl	28	25	2	1	Ostertagia ostertagi unknown protein	AAC08432	8e – 06	-
AC00980.cl	27	11	0	16	C. elegans Glycerol kinase	AAA79749	8e – 70	R11F4.1^b
AC00971.cl	26	9	0	17	C. elegans rpl-1 Ribosomal Protein Large subunit	NP_491061	5e – 116	Y71F9AL.13a^b
AC01023.cl	25	22	2	1	Ostertagia ostertagi putative ES protein F7	CAD20464	9e – 87	F02A9.2
AC00913.cl	25	6	17	2	C. elegans ribosomal protein L37	O62388	2e – 50	W01D2.1^b
AC02930.cl	24	0	0	24	C. elegans calponin-like protein	NP_504712	4e – 119	T25F10.6^b
AC00252.cl	24	12	12	0	C. elegans rpl-43	CAB54440	4e – 49	Y48B6A.2^b
AC01020.cl	23	20	3	0	C. elegans rps-15 Ribosomal Protein Small subunit RPS-15	NP_492384	1e – 88	F36A2.6^b

^a SW/TR is Swiss-prot and TrEMBL Proteinknowledgebase http://us.expasy.org/sprot/.
^b C. elegans homolog has higher probability match than the best GenBank descriptor.

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ISSN: 1471-2164

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