Skip to main content

Table 1 Gene coverage of the analysis

From: Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

 

MOUSE

HUMAN

BOTH

Sequence data:

   

Ensembl genes total:

23954

21961

 

Ensembl transcripts total:

34076

35685

 

Ortholog pairs of Ensembl genes:

  

20188

Ortholog pairs with upstream sequence extracted :

  

13272

Ortholog pairs with upstream sequence extracted (redundancies removed):

  

12239 *

Expression data:

   

Ensembl genes matching SymAtlas probes:

17552

16929

 

ortholog pairs with expression data in both species:

  

13282 **

Integrated dataset:

   

Two-species expression data AND regulatory sequence:

  

9561

  1. Numbers in the 'MOUSE' and 'HUMAN' columns signify the number of unique Ensembl identifiers in each respective species. Numbers in column 'BOTH' signify ortholog pairs of Ensembl entries. The overlap between the nonredundant sequence database (*) and the nonredundant expression dataset (**) was 9561 ortholog pairs.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us