From: Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals
Cluster number | FDR | PFM Number | PFM Annotation |
---|---|---|---|
1: Protein synthesis | <2.5% | 190 | M00025:Elk-1, M00007:Elk-1 |
 | <2.5% | 110 | M00050:E2F, MA0024:E2F |
 | <2.5% | 57 | M00108:NRF-2, MA0028:Elk-1, MA0062:NRF-2 |
 | <2.5% | 181 | MA0076:SAP-1 |
 | <10% | 18 | M00074:c-Ets-1(p54) |
 | <10% | 78 | M00262:Staf |
2: Oocyte / fertilized egg | <2.5% | 71 | M00024:E2F |
 | <2.5% | 190 | M00025:Elk-1, M00007:Elk-1 |
 | <2.5% | 9 | M00032:c-Ets-1(p54) |
 | <2.5% | 110 | M00050:E2F, MA0024:E2F |
 | <2.5% | 57 | M00108:NRF-2, MA0028:Elk-1, MA0062:NRF-2 |
 | <2.5% | 181 | MA0076:SAP-1 |
 | <10% | 238 | MA0088:Staf, M00264:Staf |
3: Neural tissues | <2.5% | 99 | M00189:AP-2 |
 | <2.5% | 115 | M00196:Sp1 |
 | <2.5% | 141 | M00256:NRSF |
 | <10% | 75 | M00243:Egr-1 |
4: Lymphocytes | <2.5% | 143 | MA0050:Irf-1, M00062:IRF-1, M00063:IRF-2 |
 | <10% | 74 | M00054:NF-kappaB, MA0061:NF-kappaB |
 | <10% | 28 | M00258:ISRE |
5: Testis / spermatogenesis | <2.5% | 109 | M00281:RFX1 |
 | <2.5% | 142 | MA0078:SOX17 |
 | <10% | 108 | M00036:v-Jun |
 | <10% | 248 | M00041:CRE-BP1/c-Jun |
 | <10% | 65 | M00100:CdxA |
6: Liver | <2.5% | 16 | M00134:HNF-4 |
 | <2.5% | 212 | M00158:COUP-TF / HNF-4, MA0017:COUP-TF |
 | <2.5% | 33 | M00206:HNF-1 |
 | <2.5% | 203 | MA0046:HNF-1, M00132:HNF-1 |
 | <2.5% | 234 | MA0047:HNF-3beta, M00131:HNF-3beta |
 | <2.5% | 113 | MA0065:PPARgamma-RXRal |
 | <10% | 46 | M00155:ARP-1 |
 | <10% | 212 | M00158:COUP-TF / HNF-4, MA0017:COUP-TF |
 | <10% | 146 | MA0071:RORalfa-1, M00156:RORalpha1 |
8: ECM | <10% | 215 | M00378:Pax-4 |
9: Cardiac muscle | <2.5% | 223 | M00026:RSRFC4 |
 | <2.5% | 144 | M00152:SRF |
 | <2.5% | 59 | M00231:MEF-2 |
 | <2.5% | 222 | M00232:MEF-2 |
 | <2.5% | 161 | M00252:TATA |
 | <2.5% | 259 | M00418:TGIF, M00419:MEIS1 |
 | <2.5% | 160 | MA0052:MEF2 |
 | <10% | 60 | M00006:MEF-2 |
12: Skeletal muscle | <2.5% | 201 | M00184:MyoD, M00001:MyoD |
 | <10% | 17 | M00002:E47 |
 | <10% | 59 | M00231:MEF-2 |
13: Endoplasmatic reticulum | <10% | 190 | M00025:Elk-1, M00007:Elk-1 |
 | <10% | 57 | M00108:NRF-2, MA0028:Elk-1, MA0062:NRF-2 |
 | <10% | 181 | MA0076:SAP-1 |
15: Erythrocyte | <10% | 209 | M00128:GATA-1, M00127:GATA-1 |
 | <10% | 122 | M00203:GATA-X |
 | <10% | 198 | M00413:AREB6 |
16: B lymphocyte | <2.5% | 133 | MA0081:SPI-B |
17: Kidney | <2.5% | 33 | M00206:HNF-1 |
 | <2.5% | 188 | M00411:HNF-4alpha1 |
22: Cell cycle genes | <10% | 110 | M00050:E2F, MA0024:E2F |
24: Pancreas | <10% | 121 | M00071:E47 |
 | <10% | 193 | M00080:Evi-1, M00082:Evi-1 |
30: Small intestine | <10% | 31 | M00346:GATA-1, M00347:GATA-1, M00348:GATA-2 |
40: Smooth muscle | <2.5% | 144 | M00152:SRF |
 | <2.5% | 245 | M00186:SRF, M00215:SRF |
 | <2.5% | 88 | MA0083:SRF |
44: Retina | <2.5% | 196 | M00087:Ik-2 |
45: Testis (mouse signal only) | <2.5% | 164 | M00253:cap |
49: Lung/endothelium (mouse signal only) | <10% | 66 | M00199:AP-1, M00037:NF-E2 |
65: NfkappaB signalling | <2.5% | 235 | M00051:NF-kappaB (p50), MA0105:p50 |