Table 1 Summary of data collection
From: A study of inter-lab and inter-platform agreement of DNA microarray data
Data Set | Array | Genes | Sample | Replicates | Data type | Platform | Lab | Data Source |
|---|---|---|---|---|---|---|---|---|
KC | CI 15K cDNA | 15K | Clonetech | 4 | Raw intensity | cDNA | Keck | In house |
KAV | Affymetrix 430A | 23K | Clonetech | 2 | AV(Bioconductor) | Affymetrix | Keck | In house |
KLW | Affymetrix 430A | 23K | Clonetech | 2 | Li and Wong | Affymetrix | Keck | In house |
KRMA | Affymetrix 430A | 23K | Clonetech | 2 | RMA | Affymetrix | Keck | In house |
CC | Riken16K cDNA by Agilent | 16K | Clonetech | 3 | Raw intensity | cDNA | Cal Tech | NCBI GEO |
CO | Riken16K Oligo by Agilent | 16K | Clonetech | 3 | Raw intensity | Oligo | Cal Tech | NCBI GEO |
GNF | Affymetrix U74Av2 | 12K | In house | 2 | AV(MAS4.0) | Affymetrix | GNF | expression.gnf.org |