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Table 3 Summary of predictions for SNPs

From: Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays

Organism Number Sequences Number Sites Number Haplotypes Number Unresolved clusters Minimum Number Assays
Mumps 17 171 85 11 10
SARS 102 218 164 65 114
  1. The minimum number of assays indicates the fewest haplotypes that need to be queried to discriminate all the input genomes to the maximum degree possible, that is, the number of assays that would need to be done to classify an unknown isolate in terms of its similarity to the currently sequenced strains using this type of forensic marker.