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Table 3 Summary of predictions for SNPs

From: Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays

Organism

Number Sequences

Number Sites

Number Haplotypes

Number Unresolved clusters

Minimum Number Assays

Mumps

17

171

85

11

10

SARS

102

218

164

65

114

  1. The minimum number of assays indicates the fewest haplotypes that need to be queried to discriminate all the input genomes to the maximum degree possible, that is, the number of assays that would need to be done to classify an unknown isolate in terms of its similarity to the currently sequenced strains using this type of forensic marker.
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BMC Genomics

ISSN: 1471-2164

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