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Table 6 Enzyme frequency for creating fragment length polymorphisms in SARS and mumps viruses

From: Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays

Enzyme SARS Mumps Enzyme SARS Mumps
Tru9I 335 149 NciI 54 32
Hsp92II 320 98 EcoRV 52 36
Rsal 318 101 TthlllI 52 15
DdeI 317 104 EclHKI 52 11
Alul 270 135 Csp45I 51 29
Bsp1286I 227 48 Bbul 47 14
TaqI 213 121 SphI 47 14
CfoI 195 54 Bst98I 44 20
HhaI 195 54 XbaI 41 28
MboI 190 135 XmnI 39 29
Sau3AI 190 135 NheI 39 14
HinfI 179 105 AccB7I 39 8
AccI 170 45 NcoI 35 8
VspI 161 62 HpaI 34 8
BstOI 160 77 EcoRI 32 23
MspAI 140 55 AvaI 30 32
Styl 133 39 NruI 24 4
Sau96I 132 74 BclI 23 33
AvalI 128 57 HindIII 22 27
SinI 128 57 Sall 21 15
HincII 126 24 BssHII 20 4
BsrSI 119 49 Eco72I 19 6
RvuII 114 40 Smal 17 12
Dral 113 26 Xmal 17 12
Pstl 113 13 XhoI 13 14
XhoII 112 69 Mlul 13 0
Haell 112 18 Clal 9 12
HaelIl 110 83 SnaBI 8 4
Scal 103 16 Nael 6 8
HpaII 91 82 NgoMI 6 8
MspI 91 82 Eco47III 3 18
Sspl 91 33 Stul 3 17
BanII 91 18 BamHl 0 24
EcoICRI 91 8 AcyI 0 18
Spel 85 21 BalI 0 18
Ndel 83 20 Hsp92I 0 18
Nsil 82 8 Bgll 0 12
Acc65I 74 9 Agel 0 11
KpnI 74 9 BsaOI 0 9
BstXI 73 6 SacI 0 6
Bsu36I 72 16 AatII 0 4
BsrBRI 65 41 Apal 0 4
BglIl 64 35 Pvul 0 4
BanI 62 17 BstZI 0 3
BstEII 61 8 Eco52I 0 3
Alw441 59 6 SacII 0 2