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Table 1 Location of Japanese quail microsatellite markers from the genetic map on the chicken February 2004 genome assembly by BLASTN.

From: Integrated maps in quail (Coturnix japonica) confirm the high degree of synteny conservation with chicken (Gallus gallus) despite 35 million years of divergence

Quail locus1 Origin Linkage group Position (cM) Chicken Chr:Mb3 E-value4
GUJ0090 quail CJA01 0 chr1:24.420 2.3E-01
GUJ0068 quail CJA01 6 chr1:26.583 2.9E-26
GUJ0062 quail CJA01 24 chr1:37.771 2.0E-09
GUJ0098 quail CJA01 32 chr1:43.072 2.5E-24
GUJ0017 quail CJA01 39 chr1:47.501 2.5E-17
GUJ0036 2 quail CJA01 55 chr1:40.563 1.1E-11
GUJ0077 quail CJA01 92 chr1:76.184 6.1E-28
GUJ0056 quail CJA01 96 chr1:77.751 1.2E-05
GUJ0013 quail CJA01 126 no hit -
GUJ0006 quail CJA01 154 chr1:122.564 4.9E-03
GUJ0048 quail CJA01 161 chr1:122.564 1.7E-05
GUJ0050 quail CJA01 173 chr1:127.921 1.1E-09
GUJ0051 quail CJA01 193 chr1:126.894 3.5E-10
GUJ0078 quail CJA01 218 chr1:133.776 2.0E-01
GUJ0052 quail CJA01 232 no hit -
GUJ0055 quail CJA01 244 chr1:157.520 1.8E-06
GUJ0101 quail CJA01 ± 232 chr1:156.040 2.1E-16
ADL0037 chicken CJA01 ± 126 chr1:104.907 3.2E-50
GUJ0095 2 quail CJA01 ± 126 chr1:100.717 1.4E-02
GUJ0064 2 quail CJA01 ± 275 chr1:184.395 6.6E-23
GUJ0037 quail CJA02 0 chr2:14.772 1.3E-18
GUJ0067 quail CJA02 39 chr2:42.387 4.4E-04
GUJ0007 quail CJA02 74 no hit -
GUJ0093 quail CJA02 91 chr2:46.413 2.3E-03
GUJ0079 2 quail CJA02 99 chr2:49.645 1.2E-01
GUJ0027 quail CJA02 109 chr2:96.645 2.7E-09
GUJ0084 quail CJA02 117 chr2:105.833 4.5E-06
GUJ0091 2 quail CJA02 156 chr2:125.035 9.2E-14
GUJ0069 quail CJA02 161 chr2:132.081 1.1E-19
GUJ0073 quail CJA02 174 chr2:138.921 8.3E-07
GUJ0063 quail CJA02 ± 110 chr2:106.842 4.9E-26
GUJ0066 2 quail CJA02 ± 150 chr2:132.662 1.2E-07
GUJ0041 quail CJA03 0 no hit -
GUJ0035 quail CJA03 9 chr3:50.291 3.5E-09
GUJ0011 quail CJA03 48 chr3:87.368 3.0E-05
GUJ0057 quail CJA03 ± 20 chr3:7.343 5.6E-11
GUJ0081 quail CJA03 ± 20 no hit -
GUJ0099 quail CJA03 ± 48 chr3:86.666 7.6E-25
GUJ0094 2 quail CJA03 ± 5 chr14:18.036 2.9E-22
GUJ0026 quail CJA04 0 chr4:10.067 2.8E+00
GUJ0074 quail CJA04 21 chr4:49.116 3.1E-31
ADL0255 2 chicken CJA04 ± 10 chr4:2.089 4.2E-54
GUJ0059 quail CJA05 0 chr5:14.850 3.2E-25
GUJ0049 quail CJA05 12 chr5:7.574 1.9E-21
GUJ0100 quail CJA05 22 chr5:28.592 1.6E-16
GUJ0021 quail CJA06 0 chr6:4.398 1.9E-13
GUC0023 2 chicken CJA06 16 chr6:7.890 2.4E-25
GUJ0087 quail CJA06 28 chr6:16.277 1.2E-11
GUJ0054 quail CJA06 56 chr6:28.056 5.6E-07
ADL0142 chicken CJA06 62 chr6:28.806 1.2E-40
GUJ0032 2 quail CJA06 96 chrun:41.057 1.4E-04
GUJ0029 quail CJA06 ± 0 chr6:4.398 2.4E-12
GUC0034 2 chicken CJA07 0 chr7:23.564 6.5E-11
GUJ0089 2 quail CJA07 10 chr7:27.428 1.7E-05
GUJ0071 quail CJA09 0 chr9:3.000 8.4E-13
GUJ0028 quail CJA09 27 chr9:19.281 2.5E-11
GUJ0080 2 quail CJA09 57 chrun:0.025 1.1E+00
GUJ0010 quail CJA10 0 no hit -
GUJ0082 2 quail CJA10 19 no hit -
GUJ0085 quail CJA10 31 chr10:20.429 1.6E-19
GUJ0044 quail CJA13 0 chr13:3.033 6.7E-16
GUJ0033 quail CJA13 22 chr13:16.646 1.0E-11
GUJ0005 quail CJA13 33 no hit -
GUJ0047 2 quail CJA13 ± 22 chr13:17.033 5.5E-28
GUJ0097 quail CJA14 0 chr14:7.106 5.7E-09
GUJ0023 quail CJA14 8 chr14:8.487 4.4E-15
GUJ0039 quail CJA18 9 chr3_random 2.6E-13
GUJ0003 quail CJA18 46 chr18:7.342 1.3E-11
GUJ0083 quail CJA20 0 chr20:4.643 2.6E-02
GUJ0065 quail CJA20 23 chr20:7.845 7.9E-06
GUJ0001 quail CJA27 0 chr27:0.677 4.5E-25
GUJ0014 quail CJA27 11 chr27:0.750 1.5E-07
GUJ0040 quail CJAZ 0 chrZ:27.527 1.3E-16
GUJ0025 quail CJAZ 29 chr10_random 2.4E-21
  1. 1GUJ markers were developed by Kayang et al. (2000, 2002) [37, 38], GUC markers were developed by Kayang et al (2003) [53], ADL markers were developed by Cheng and Crittenden (1994) [54]; Cheng et al. (1995) [55].
  2. 2Newly mapped microsatellites
  3. 3Position of the quail microsatellite sequence on the chicken genome sequence assembly, determined by BLASTN
  4. 4E-value of the quail-chicken alignment
  5. ± indicates the median position of non-framework markers Chrun: chicken genomic sequence of unknown location. Chr_random: chicken genomic sequence assigned to, but not located on a chromosome.