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Table 1 Location of Japanese quail microsatellite markers from the genetic map on the chicken February 2004 genome assembly by BLASTN.

From: Integrated maps in quail (Coturnix japonica) confirm the high degree of synteny conservation with chicken (Gallus gallus) despite 35 million years of divergence

Quail locus1

Origin

Linkage group

Position (cM)

Chicken Chr:Mb3

E-value4

GUJ0090

quail

CJA01

0

chr1:24.420

2.3E-01

GUJ0068

quail

CJA01

6

chr1:26.583

2.9E-26

GUJ0062

quail

CJA01

24

chr1:37.771

2.0E-09

GUJ0098

quail

CJA01

32

chr1:43.072

2.5E-24

GUJ0017

quail

CJA01

39

chr1:47.501

2.5E-17

GUJ0036 2

quail

CJA01

55

chr1:40.563

1.1E-11

GUJ0077

quail

CJA01

92

chr1:76.184

6.1E-28

GUJ0056

quail

CJA01

96

chr1:77.751

1.2E-05

GUJ0013

quail

CJA01

126

no hit

-

GUJ0006

quail

CJA01

154

chr1:122.564

4.9E-03

GUJ0048

quail

CJA01

161

chr1:122.564

1.7E-05

GUJ0050

quail

CJA01

173

chr1:127.921

1.1E-09

GUJ0051

quail

CJA01

193

chr1:126.894

3.5E-10

GUJ0078

quail

CJA01

218

chr1:133.776

2.0E-01

GUJ0052

quail

CJA01

232

no hit

-

GUJ0055

quail

CJA01

244

chr1:157.520

1.8E-06

GUJ0101

quail

CJA01

± 232

chr1:156.040

2.1E-16

ADL0037

chicken

CJA01

± 126

chr1:104.907

3.2E-50

GUJ0095 2

quail

CJA01

± 126

chr1:100.717

1.4E-02

GUJ0064 2

quail

CJA01

± 275

chr1:184.395

6.6E-23

GUJ0037

quail

CJA02

0

chr2:14.772

1.3E-18

GUJ0067

quail

CJA02

39

chr2:42.387

4.4E-04

GUJ0007

quail

CJA02

74

no hit

-

GUJ0093

quail

CJA02

91

chr2:46.413

2.3E-03

GUJ0079 2

quail

CJA02

99

chr2:49.645

1.2E-01

GUJ0027

quail

CJA02

109

chr2:96.645

2.7E-09

GUJ0084

quail

CJA02

117

chr2:105.833

4.5E-06

GUJ0091 2

quail

CJA02

156

chr2:125.035

9.2E-14

GUJ0069

quail

CJA02

161

chr2:132.081

1.1E-19

GUJ0073

quail

CJA02

174

chr2:138.921

8.3E-07

GUJ0063

quail

CJA02

± 110

chr2:106.842

4.9E-26

GUJ0066 2

quail

CJA02

± 150

chr2:132.662

1.2E-07

GUJ0041

quail

CJA03

0

no hit

-

GUJ0035

quail

CJA03

9

chr3:50.291

3.5E-09

GUJ0011

quail

CJA03

48

chr3:87.368

3.0E-05

GUJ0057

quail

CJA03

± 20

chr3:7.343

5.6E-11

GUJ0081

quail

CJA03

± 20

no hit

-

GUJ0099

quail

CJA03

± 48

chr3:86.666

7.6E-25

GUJ0094 2

quail

CJA03

± 5

chr14:18.036

2.9E-22

GUJ0026

quail

CJA04

0

chr4:10.067

2.8E+00

GUJ0074

quail

CJA04

21

chr4:49.116

3.1E-31

ADL0255 2

chicken

CJA04

± 10

chr4:2.089

4.2E-54

GUJ0059

quail

CJA05

0

chr5:14.850

3.2E-25

GUJ0049

quail

CJA05

12

chr5:7.574

1.9E-21

GUJ0100

quail

CJA05

22

chr5:28.592

1.6E-16

GUJ0021

quail

CJA06

0

chr6:4.398

1.9E-13

GUC0023 2

chicken

CJA06

16

chr6:7.890

2.4E-25

GUJ0087

quail

CJA06

28

chr6:16.277

1.2E-11

GUJ0054

quail

CJA06

56

chr6:28.056

5.6E-07

ADL0142

chicken

CJA06

62

chr6:28.806

1.2E-40

GUJ0032 2

quail

CJA06

96

chrun:41.057

1.4E-04

GUJ0029

quail

CJA06

± 0

chr6:4.398

2.4E-12

GUC0034 2

chicken

CJA07

0

chr7:23.564

6.5E-11

GUJ0089 2

quail

CJA07

10

chr7:27.428

1.7E-05

GUJ0071

quail

CJA09

0

chr9:3.000

8.4E-13

GUJ0028

quail

CJA09

27

chr9:19.281

2.5E-11

GUJ0080 2

quail

CJA09

57

chrun:0.025

1.1E+00

GUJ0010

quail

CJA10

0

no hit

-

GUJ0082 2

quail

CJA10

19

no hit

-

GUJ0085

quail

CJA10

31

chr10:20.429

1.6E-19

GUJ0044

quail

CJA13

0

chr13:3.033

6.7E-16

GUJ0033

quail

CJA13

22

chr13:16.646

1.0E-11

GUJ0005

quail

CJA13

33

no hit

-

GUJ0047 2

quail

CJA13

± 22

chr13:17.033

5.5E-28

GUJ0097

quail

CJA14

0

chr14:7.106

5.7E-09

GUJ0023

quail

CJA14

8

chr14:8.487

4.4E-15

GUJ0039

quail

CJA18

9

chr3_random

2.6E-13

GUJ0003

quail

CJA18

46

chr18:7.342

1.3E-11

GUJ0083

quail

CJA20

0

chr20:4.643

2.6E-02

GUJ0065

quail

CJA20

23

chr20:7.845

7.9E-06

GUJ0001

quail

CJA27

0

chr27:0.677

4.5E-25

GUJ0014

quail

CJA27

11

chr27:0.750

1.5E-07

GUJ0040

quail

CJAZ

0

chrZ:27.527

1.3E-16

GUJ0025

quail

CJAZ

29

chr10_random

2.4E-21

  1. 1GUJ markers were developed by Kayang et al. (2000, 2002) [37, 38], GUC markers were developed by Kayang et al (2003) [53], ADL markers were developed by Cheng and Crittenden (1994) [54]; Cheng et al. (1995) [55].
  2. 2Newly mapped microsatellites
  3. 3Position of the quail microsatellite sequence on the chicken genome sequence assembly, determined by BLASTN
  4. 4E-value of the quail-chicken alignment
  5. ± indicates the median position of non-framework markers Chrun: chicken genomic sequence of unknown location. Chr_random: chicken genomic sequence assigned to, but not located on a chromosome.