Table 1 Genomic Islands (Gis) identified in V. parahaemolyticus RIMD2210633 genome sequence.
From: Four genomic islands that mark post-1995 pandemic Vibrio parahaemolyticus isolates
GIs | Location (bp)(ORFs) | Directrepeat size | SizeKb | Int/Tnp | tRNAsite | %GC | 1000X 6* | % GF withlower 6* |
|---|---|---|---|---|---|---|---|---|
VPaI-1 | 381054–403433 (VP0380–VP0403) | 45 | 24 | Int | tRNA-Met | 42 | 69.1 | 97.8 |
VPaI-2 | 6660707–674355 (VP0635–VP0643) | 10 | 10 | Int | tmRNA | 45 | 76.7 | 93.9 |
VPaI-3 | 1121252–1152668 (VP1071–VP1094) | - | 32 | Int | tRNA-Ser | 42 | 53.1 | 98.8 |
VPaI-4 | 2240007–2256166 (VP2131–VP2144) | 30 | 17 | Int | tRNA-Ser | 39 | 89.3 | 99.5 |
VPaI-5 | 3084846–3099979 (VP2900–VP2910) | 13 | 12 | Int | - | 38 | 130.5 | 100 |
VPaI-6 | 1325821–1352643 (VPA1253–VPA1270) | 8 | 27 | Int | - | 43 | 72.1 | 97.2 |
VPaI-7 | 1390967–1501509 (VPA1312–VPA1398) | 8 | 81 | Tnp | - | 39 | 77.4 | 100 |