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Table 3 Non-synonymous substitutions significant group (p < 0.10) of Orthologs with SNP Pairs potential involves in pathogenicity

From: Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228

S. epidermidis ATCC12228 S. epidermidis RP62A Function N S dN/(dS+ dN) p value
   Annotation from ATCC12228 New annotation     
SE1029 SERP0918 exonuclease SbcC   5 0 1.0000 0.0107
SE0231 SERP2349 fosfomycin resistance protein fofB   4 0 1.0000 0.0228
SE0800 SERP0689 potD protein   3 0 1.0000 0.0381
SE0265 SERP2313 hypothetical protein Tranmembrane protein 3 0 1.0000 0.0383
SE1546 SERP1399 D-3-phosphoglycerate dehydrogenase   3 0 1.0000 0.0392
SE0378 SERP0259 hypothetical protein Tranmembrane protein 3 0 1.0000 0.0398
SE2085 SERP2099 gluconokinase   3 0 1.0000 0.0401
SE1042 SERP0931 peptide methionine sulfoxide reductase   3 0 1.0000 0.0405
SE0039 SERP2495 conserved hypothetical protein   3 0 1.0000 0.0406
SE0977 SERP0866 glycerol uptake facilitator   3 0 1.0000 0.0415
SE1170 SERP1049 probable ATP-dependent DNA helicase RecQ   3 0 1.0000 0.0425
SE0502 SERP0385 choline transport ATP-binding protein   3 0 1.0000 0.0427
SE0546 SERP0431 conserved hypothetical protein YvcD 3 0 1.0000 0.0440
SE1302 SERP1183 deoxyribonuclease   2 0 1.0000 0.0668
SE1527 SERP1382 conserved hypothetical protein YheB (surface protein) 2 0 1.0000 0.0707
SE2166 SERP2177 glycine betaine aldehyde dehydrogenase gbsA   2 0 1.0000 0.0719
SE2379 SERP0037 cystathionine gamma-synthase   2 0 1.0000 0.0743
SE1828 SERP1836 DNA topoisomerase III topB   2 0 1.0000 0.0743
SE1824 SERP1831 50S ribosomal protein L3   2 0 1.0000 0.0759
SE0309 SERP0186 30S ribosomal protein S12   2 0 1.0000 0.0766
SE0463 SERP0349 putative deoxyribodipyrimidine photolyase   2 0 1.0000 0.0766
SE2067 SERP2080 glycine betaine aldehyde dehydrogenase gbsA   2 0 1.0000 0.0766
SE2215 SERP2247 arginine/oirnithine antiporter   2 0 1.0000 0.0766
SE0806 SERP0695 conserved hypothetical protein YlaF 2 0 1.0000 0.0768
SE1448 SERP1335 conserved hypothetical protein YqgE (MultiDrug Efflux proteins) 2 0 1.0000 0.0775
SE0847 SERP0737 hypothetical protein phenol soluble modulin beta 1 2 0 1.0000 0.0777
SE0790 SERP0679 conserved hypothetical protein YkyA (surface protein) 2 0 1.0000 0.0779
SE2196 SERP2207 conserved hypothetical protein   2 0 1.0000 0.0781
SE2269 SERP0153 dihydropteroate synthase chain A synthetase   2 0 1.0000 0.0783
SE0744 SERP0630 2-oxoglutarate decarboxylase   2 0 1.0000 0.0783
SE2003 SERP2016 conserved hypothetical protein   2 0 1.0000 0.0783
SE1247 SERP1126 conserved hypothetical protein YqfN 2 0 1.0000 0.0787
SE1986 SERP1998 conserved hypothetical protein In larger Bacterial clades 2 0 1.0000 0.0800
SE0432 SERP0317 low-affinity inorganic phosphate transporter   2 0 1.0000 0.0808
SE1745 SERP1754 conserved hypothetical protein YhfK 2 0 1.0000 0.0827
SE0674 SERP0564 clpB protein   2 0 1.0000 0.0846
SE0773 SERP0660 conserved hypothetical protein Cation transporter 2 0 1.0000 0.0846
SE1608 SERP1461 beta-lactamase   2 0 1.0000 0.0846
SE2128 SERP2140 conserved hypothetical protein YfmM 2 0 1.0000 0.0874
SE0506 SERP0389 alcohol dehydrogenase   7 1 0.7451 0.0953