Table 2 Domain interactions in predictions of protein interactions in Plasmodium. Predicting protein interactions by their highest scoring domain interaction in P. falciparum we find the following 20 most frequent domain interactions. N refers to the domain interactions occurrence in the predicted set, % sl depicts the percentage of self protein interactions, and E is the expectation value of the underlying domain interaction.
domain | description | domain | description | N | % sl | E |
|---|---|---|---|---|---|---|
PF00076 | rrm1 | PF01423 | LSM | 137 | - | 14.5 |
PF00227 | proteasome | PF00227 | proteasome | 120 | 12.5 | 103.1 |
PF01423 | LSM | PF01423 | LSM | 120 | 12.5 | 387.1 |
PF00005 | ABC transporter | PF00005 | ABC transporter | 83 | 16.5 | 4.9 |
PF00097 | zf-C3HC4 | PF00240 | ubiquitin | 74 | - | 5.7 |
PF00076 | rrm1 | PF00076 | rrm1 | 56 | 28.7 | 14.5 |
PF00022 | actin | PF00022 | actin | 55 | 18.1 | 8.5 |
PF00125 | histone | PF00125 | histone | 36 | 22.1 | 11.6 |
PF01423 | LSM | PF06220 | zf-U1 | 30 | - | 20.3 |
PF02953 | Tim10/DDP zinc finger | PF00153 | mitochondrial carrier | 30 | - | 6.6 |
PF00097 | zf-C3HC4 | PF01283 | Ribosomal protein S | 24 | - | 3.0 |
PF00097 | zf-C3HC4 | PF01775 | Ribosomal L18ae | 24 | - | 7.3 |
PF00097 | zf-C3HC4 | PF00833 | Ribosomal S17 | 24 | - | 3.6 |
PF00097 | zf-C3HC4 | PF00827 | Ribosomal L15 | 24 | - | 3.2 |
PF00118 | TCP-1/cpn60 chaperonin | PF00118 | TCP-1/cpn60 chaperonin | 23 | 34.8 | 17.9 |
PF00928 | Adaptor complexes | PF01217 | Clathrin adaptor | 20 | - | 21.7 |
PF00076 | rrm1 | PF01974 | tRNA intron endonuclease | 18 | - | 3.0 |
PF00076 | rrm1 | PF06220 | zf-U1 | 18 | - | 6.2 |
PF01602 | Adaptin N terminal region | PF01217 | Clathrin adaptor complex | 16 | - | 9.2 |
PF00125 | histone | PF00956 | Nucleosome assembly protein | 16 | - | 14.5 |