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Table 3 Putative CRE sites of L. plantarum csc clusters

From: Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria

cluster

gene

position

sequence

E-score

I

LPL1450

starts 66 and 42 bp upstream of gene

TGATTATCGTTACCA

TGATCACCGCAGGCA

n.a.

 

LPL1449

inside gene

TGTAAGCGTCACCA

3,60E-05

 

LPL1446

inside gene

TGGAACCGCTGGCA

6,80E-06

II

LPL2175

starts 71 bp upstream of gene

TGAAAGCGGAATCA

2,60E-05

III

LPL2977

inside gene

TGATAACGGCATCA

5,00E-06

IV

LPL3067

starts 263 bp upstream of gene

TGTAACCGTTATCC

8,80E-05

 

LPL3066

inside gene

TGGAACCCTTAACA

6,30E-05

 

LPL3064

inside gene

TGCAAGCGTATCCA

1,60E-06

V

none

   

VI

LPL3117

starts 62 and 31 bp upstream of gene

TGTGAGCGCTATCA

AGATTACGCTGTCA

7,80E-06

7,80E-05

VII

none

   

VIII

LPL3454

starts 121 bp upstream of gene

TGGAATCGCTGTCA

1,20E-05

IX

none

   

consensus Bacillus

 

TGAAAGCGTTTTCA

 
  1. n.a. = clear palindromes which are possible CRE sites, but score is lowered due to insertion of 1 extra nucleotide