Acquisition of genome information from single-celled unculturable organisms (radiolaria) by exploiting genome profiling (GP)

Table 1 Organisms used in this study and their taxonomic classification

Code^†	Species	Taxon*			Source^§ (ID^‡)
A₁-1	Didymocyrtis tetrathalamus	Pc ^#	Rh	Pro	1 (3354)
A₁-2	Didymocyrtis tetrathalamus	Pc ^#	Rh	Pro	1 (3356)
A₂	Dictyocoryne profunda	Pc ^#	Rh	Pro	2 (3176)
A₃-1	Dictyocoryne truncatum	Pc ^#	Rh	Pro	2 (3175)
A₃-2	Dictyocoryne truncatum	Pc ^#	Rh	Pro	2 (3174)
A₃-3	Dictyocoryne truncatum	Pc ^#	Rh	Pro	1 (3360)
A₄	Hymeniastrum euclidis	Pc ^#	Rh	Pro	3 (3032)
A₅	Eucyrtidium hexasticum	Pc ^#	Rh	Pro	3 (3039)
B	A species belonging to Acantharia^$	Acantharia^#	Rh	Pro	4 (3153)
C	A species belonging to Foraminifera^$	Foraminifera	Rh	Pro	4 (3147)
D-1	A species belonging to Phaeodaria^$	Ph^#	Rh	Pro	4 (3150)
D-2	A species belonging to Phaeodaria^$	Ph^#	Rh	Pro	4 (3151)
E	A species belonging to Diatomophyceae^$	Heterokontophyta	→\|	Pro	4 (3148)
F	Saccharomyces cerevisiae	Fungi	→	→\|	5 (-)
G	Escherichia coli (S26)	Ba	→	→\|	5 (-)
H	Bacillus subtilis	Ba	→	→\|	5 (-)

^† Alphabetical codes stand for a taxon of organism. The subdivision of a taxon is shown by a suffix. Such clone is called by the additional number.
* Pc: Polycystinea, Ph: Phaeodaria, Ba: Bacteria, Rh: Rhizaria, Pro: Protista.
^§ Each number represents the sampling location and date; 1. off-shore of Okinawa island, Japan/May 2005. 2. off-shore of Okinawa island, Japan/Nov. 2004. 3. off-shore of Okinawa island, Japan/Dec. 2003. 4. Sado island, Japan/Jul. 2004. 5. Saccharomyces cerevisiae was commercially obtained from Nisshin Flour Milling Co.,Ltd. Escherichia coli (S26) was obtained from the Saitama Institute of Public Health (Saitama, Japan). Genomic DNA of Bacillus subtilis was a gift from Dr. Itaya (Mitsubishi Institute of Life Sciences, Japan). F-H used the data registered as reference data.
^‡ Experimental serial no.
^# Haeckel's Radiolaria.
^$ Nomenclature at the taxonomical level of class.

ISSN: 1471-2164