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Table 1 Organisms used in this study and their taxonomic classification

From: Acquisition of genome information from single-celled unculturable organisms (radiolaria) by exploiting genome profiling (GP)

Code Species Taxon*    Source§ (ID)
A1-1 Didymocyrtis tetrathalamus Pc # Rh Pro 1 (3354)
A1-2 Didymocyrtis tetrathalamus Pc # Rh Pro 1 (3356)
A2 Dictyocoryne profunda Pc # Rh Pro 2 (3176)
A3-1 Dictyocoryne truncatum Pc # Rh Pro 2 (3175)
A3-2 Dictyocoryne truncatum Pc # Rh Pro 2 (3174)
A3-3 Dictyocoryne truncatum Pc # Rh Pro 1 (3360)
A4 Hymeniastrum euclidis Pc # Rh Pro 3 (3032)
A5 Eucyrtidium hexasticum Pc # Rh Pro 3 (3039)
B A species belonging to Acantharia$ Acantharia# Rh Pro 4 (3153)
C A species belonging to Foraminifera$ Foraminifera Rh Pro 4 (3147)
D-1 A species belonging to Phaeodaria$ Ph# Rh Pro 4 (3150)
D-2 A species belonging to Phaeodaria$ Ph# Rh Pro 4 (3151)
E A species belonging to Diatomophyceae$ Heterokontophyta →| Pro 4 (3148)
F Saccharomyces cerevisiae Fungi →| 5 (-)
G Escherichia coli (S26) Ba →| 5 (-)
H Bacillus subtilis Ba →| 5 (-)
  1. Alphabetical codes stand for a taxon of organism. The subdivision of a taxon is shown by a suffix. Such clone is called by the additional number.
  2. * Pc: Polycystinea, Ph: Phaeodaria, Ba: Bacteria, Rh: Rhizaria, Pro: Protista.
  3. § Each number represents the sampling location and date; 1. off-shore of Okinawa island, Japan/May 2005. 2. off-shore of Okinawa island, Japan/Nov. 2004. 3. off-shore of Okinawa island, Japan/Dec. 2003. 4. Sado island, Japan/Jul. 2004. 5. Saccharomyces cerevisiae was commercially obtained from Nisshin Flour Milling Co.,Ltd. Escherichia coli (S26) was obtained from the Saitama Institute of Public Health (Saitama, Japan). Genomic DNA of Bacillus subtilis was a gift from Dr. Itaya (Mitsubishi Institute of Life Sciences, Japan). F-H used the data registered as reference data.
  4. Experimental serial no.
  5. # Haeckel's Radiolaria.
  6. $ Nomenclature at the taxonomical level of class.
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