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Table 1 Organisms used in this study and their taxonomic classification

From: Acquisition of genome information from single-celled unculturable organisms (radiolaria) by exploiting genome profiling (GP)

Code†

Species

Taxon*

  

Source§ (ID‡)

A1-1

Didymocyrtis tetrathalamus

Pc #

Rh

Pro

1 (3354)

A1-2

Didymocyrtis tetrathalamus

Pc #

Rh

Pro

1 (3356)

A2

Dictyocoryne profunda

Pc #

Rh

Pro

2 (3176)

A3-1

Dictyocoryne truncatum

Pc #

Rh

Pro

2 (3175)

A3-2

Dictyocoryne truncatum

Pc #

Rh

Pro

2 (3174)

A3-3

Dictyocoryne truncatum

Pc #

Rh

Pro

1 (3360)

A4

Hymeniastrum euclidis

Pc #

Rh

Pro

3 (3032)

A5

Eucyrtidium hexasticum

Pc #

Rh

Pro

3 (3039)

B

A species belonging to Acantharia$

Acantharia#

Rh

Pro

4 (3153)

C

A species belonging to Foraminifera$

Foraminifera

Rh

Pro

4 (3147)

D-1

A species belonging to Phaeodaria$

Ph#

Rh

Pro

4 (3150)

D-2

A species belonging to Phaeodaria$

Ph#

Rh

Pro

4 (3151)

E

A species belonging to Diatomophyceae$

Heterokontophyta

→|

Pro

4 (3148)

F

Saccharomyces cerevisiae

Fungi

→

→|

5 (-)

G

Escherichia coli (S26)

Ba

→

→|

5 (-)

H

Bacillus subtilis

Ba

→

→|

5 (-)

  1. † Alphabetical codes stand for a taxon of organism. The subdivision of a taxon is shown by a suffix. Such clone is called by the additional number.
  2. * Pc: Polycystinea, Ph: Phaeodaria, Ba: Bacteria, Rh: Rhizaria, Pro: Protista.
  3. § Each number represents the sampling location and date; 1. off-shore of Okinawa island, Japan/May 2005. 2. off-shore of Okinawa island, Japan/Nov. 2004. 3. off-shore of Okinawa island, Japan/Dec. 2003. 4. Sado island, Japan/Jul. 2004. 5. Saccharomyces cerevisiae was commercially obtained from Nisshin Flour Milling Co.,Ltd. Escherichia coli (S26) was obtained from the Saitama Institute of Public Health (Saitama, Japan). Genomic DNA of Bacillus subtilis was a gift from Dr. Itaya (Mitsubishi Institute of Life Sciences, Japan). F-H used the data registered as reference data.
  4. ‡ Experimental serial no.
  5. # Haeckel's Radiolaria.
  6. $ Nomenclature at the taxonomical level of class.