Table 4 Contigs containing ESTs that are over-represented over 20-fold in the FGAS dataset.
From: Wheat EST resources for functional genomics of abiotic stress
Contig name | Annotation | Fold representation (FGAS/NSF-DuPont) | Reference |
|---|---|---|---|
CL91Contig4 | No Gene Ontology Hit (Wcor413, manual annotation) | 163.30 | [59] |
CL206Contig4 | Low molecular mass early light-inducible protein HV90, chloroplast precursor (ELIP) | 94.35 | [60] |
CL386Contig5 | Chitinase (EC 3.2.1.14) | 68.94 | [31] |
CL1959Contig1 | Legumin-like protein | 68.94 | [61] |
CL117Contig7 | No Gene Ontology Hit (Lea/Rab, manual annotation) | 61.69 | [62,63] |
CL10Contig25 | Defensin precursor | 54.43 | [64] |
CL347Contig1 | COR39 (WCS120 homolog, manual annotation) | 52.61 | [65] |
CL158Contig8 | Putative 1-aminocyclopropane-1-carboxylate oxidase | 47.17 | Â |
CL386Contig1 | Chitinase 1 | 43.54 | [31] |
CL347Contig2 | Cold shock protein CS66 (Wcs120 homolog, manual annotation) | 43.54 | [65] |
CL756Contig2 | Hypothetical protein 259I16.2b (LEA homolog, manual annotation) | 43.54 | [66] |
CL1620Contig2 | No Gene Ontology Hit | 32.66 | Â |
CL411Contig1 | Putative phytosulfokine receptor (Wheat Ice recristallization inhibitor, manual annotation) | 32.66 | [32] |
CL349Contig4 | Ferredoxin-NADP(H) oxidoreductase | 32.66 | [45] |
CL1918Contig1 | Glycosyltransferase | 32.66 | [16] |
CL2Contig21 | Hypothetical protein (Fragment) (Cab binding protein, manual annotation) | 32.66 | Genbank U73218 |
CL756Contig3 | No Gene Ontology Hit | 29.03 | Â |
CL2Contig9 | Hypothetical protein (Fragment) (Cab binding protein, manual annotation) | 29.03 | Genbank U73218 |
CL3270Contig2 | No Gene Ontology Hit | 29.03 | Â |
CL28Contig11 | Extracellular invertase (EC 3.2.1.26) | 29.03 | [67] |
CL650Contig2 | Cold acclimation protein WCS19 | 26.30 | [68] |
CL1442Contig1 | Putative major facilitator superfamily antiporter | 25.40 | Â |
CL1698Contig3 | No Gene Ontology Hit | 25.40 | Â |
CL704Contig4 | Legumin-like protein | 25.40 | [61] |
CL4965Contig1 | Hypothetical protein P0508B05.10 | 25.40 | Â |
CL4930Contig1 | ATP-dependent RNA helicase | 25.40 | [69] |
CL411Contig4 | No Gene Ontology Hit (Wheat Ice recristallization inhibitor, manual annotation) | 25.40 | [32] |
CL2910Contig2 | CONSTANS-like protein CO6 | 25.40 | Â |
CL117Contig3 | No Gene Ontology Hit (Lea/Rab) | 25.40 | [63] |
CL4699Contig1 | Cytochrome P450 | 25.40 | Â |
CL4567Contig1 | No Gene Ontology Hit | 25.40 | Â |
CL1631Contig3 | Beta-1,3-glucanase | 25.40 | [33] |
CL411Contig3 | Putative phytosulfokine receptor (Wheat Ice recristallization inhibitor, manual annotation) | 25.40 | [32] |
CL91Contig8 | No Gene Ontology Hit (COR413, manual annotation) | 25.40 | [59] |
CL2020Contig1 | No Gene Ontology Hit | 23.58 | Â |
CL1106Contig2 | Putative cytochrome c oxidoreductase | 23.58 | [70] |
CL280Contig5 | No Gene Ontology Hit (blt14, manual annotation) | 23.58 | [71] |
CL1911Contig2 | Putative cysteine proteinase inhibitor | 21.77 | [72] |
CL3036Contig1 | No Gene Ontology Hit hypothetical protein (OSJNBa0062C05.24, manual annotation), | 21.77 | Â |
CL171Contig6 | No Gene Ontology Hit | 21.77 | Â |
CL202Contig14 | No Gene Ontology Hit | 21.77 | Â |
CL2484Contig2 | No Gene Ontology Hit (putative F-Box family, manual annotation) | 21.77 | Â |
CL3205Contig2 | Hypothetical protein At2g43940 | 21.77 | Â |
CL117Contig2 | No Gene Ontology Hit (Lea/Rab) | 21.77 | [63] |
CL2663Contig3 | Serine carboxypeptidase I precursor (EC 3.4.16.5) (Carboxypeptidase C) (CP-MI) | 21.77 | Â |
CL4989Contig1 | No Gene Ontology Hit | 21.77 | Â |
CL437Contig6 | Putative family II lipase EXL4 | 21.77 | Â |
CL2012Contig3 | CIPK-like protein 1 (EC 2.7.1.37) (OsCK1) | 21.77 | [73] |
CL1442Contig3 | Putative major facilitator superfamily antiporter (sugar transporter family, manual annotation) | 21.77 | Â |
CL3511Contig1 | Similarity to receptor protein kinase (leucine rich protein similar to TIR1, manual annotation) | 21.77 | [74] |
CL861Contig1 | No Gene Ontology Hit | 21.77 | Â |
CL4814Contig1 | Putative cinnamyl alcohol dehydrogenase | 21.77 | Â |
CL2Contig49 | Chlorophyll a/b-binding protein WCAB precursor | 21.77 | Genbank U73218 |
CL4798Contig1 | No Gene Ontology Hit | 21.77 | Â |
CL1740Contig2 | Hypothetical protein OSJNBa0086E02.13 (Hypothetical protein P0419C04.2) (putative haloacid dehalogenase-like hydrolase, manual annotation) | 21.77 | Â |
CL4476Contig1 | No Gene Ontology Hit (phosphate induced protein, manual annotation) | 21.77 | Â |
CL4337Contig1 | Putative o-methyltransferase | 21.77 | [75] |
CL2623Contig1 | No Gene Ontology Hit (lumenal protein subunit of photosystem II, manual annotation) | 21.77 | Â |
CL3656Contig2 | Barwin | 21.77 | Â |
CL671Contig1 | No Gene Ontology Hit | 21.77 | Â |
CL878Contig3 | Putative pollen allergen Jun o 4 | 21.77 | Â |
CL26Contig8 | No Gene Ontology Hit | 0.050 | Â |
CL350Contig1 | Photosystem II reaction center Z protein | 0.040 | Â |
CL185Contig1 | Chloroplast 50S ribosomal protein L14 | 0.037 | Â |
CL120Contig2 | Lipid transfer protein 1 precursor | 0.030 | Â |
CL144Contig2 | Alpha amylase inhibitor protein | 0.026 | Â |