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Table 4 The 37 L1-up clusters (Table 1) showing the mean cluster fold change between L1 and iL3 stages, the most significant BLAST alignment and the GO slim terms, arranged by descending L1 : iL3 difference in expression.

From: A microarray analysis of gene expression in the free-living stages of the parasitic nematode Strongyloides ratti

Cluster Expression1 BLAST alignment2 E2 Accession number2 Gene ontology (GO) slim term3
      Process Function Component
SR01196 3.65 Ce4 hypo prot5: confirmed 2.00E-16 Y34B4A.6 -6 - -
SR00880 3.13 Ce RPS-29 4.00E-28 B0412.4 embryogenesis & morphogenesis - ribosome
SR01112 2.87 -6 - - - - -
SR00783 2.78 Ce RPS-21 2.00E-33 F37C12.11 protein biosynthesis constituent of ribosome ribosome
SR00048 2.77 Ce RPL-30 2.00E-39 Y106G6H.3 - - -
SR02498 2.77 - - - - - -
SR00689 2.64 Ce RPL-38 7.00E-17 C06B8.8 protein biosynthesis RNA binding, constituent of ribosome ribosome
SR02484 2.57 - - - - - -
SR01003 2.54 Ce RPS-14 1.00E-79 F37C12.9 protein biosynthesis & metabolism - ribosome
SR01012 2.50 Ce RPS-15 8.00E-67 F36A2.6 embryogenesis & morphogenesis - -
SR00216 2.43 Ce hypo prot: confirmed 2.00E-33 C14A4.1 embryogenesis & morphogenesis - phycobilisome
SR00059 2.38 Ce RPS-10 4.00E-42 D1007.6 embryogenesis & morphogenesis - -
SR00938 2.38 Ce RPL-33 2.00E-37 F10E7.7 - tRNA binding -
SR00178 2.35 Ce hypo prot: predicted 7.00E-12 VK10D6R.1 - - -
SR02516 2.35 Ce VHA-2 3.00E-16 P34546 proton transport - integral to membrane
SR00926 2.31 Ce RPL-23 2.00E-76 B0336.10 protein biosynthesis & metabolism - ribosome
SR00943 2.31 Ce RPL-14 4.00E-44 C04F12.4 embryogenesis & morphogenesis - ribosome
SR00211 2.30 Ce RPL-31 4.00E-45 W09C5.6a protein biosynthesis constituent of ribosome ribosome
SR00804 2.30 Ce RPS-11 5.00E-62 F40F11.1 embryogenesis & morphogenesis - ribosome
SR00871 2.30 Ce LYS-4 6.00E-60 F58B3.1 - - -
SR00951 2.28 Ce RPL-37 1.00E-39 W01D2.1 - - -
SR01225 2.28 Ce hypo prot: confirmed 3.00E-41 C30C11.1 protein biosynthesis - mitochondrial ribosome
SR00012 2.27 Ce COL-34 1.00E-15 F36A4.10 - - -
SR02773 2.27 Ce adenylate kinase 1.00E-92 P34346 - adenylate kinase activity -
SR01008 2.23 Ce RPS-26 9.00E-61 F39B2.6 larval development - -
SR01007 2.22 Ce RPS-4 1.00E-111 Y43B11AR.4 protein biosynthesis constituent of ribosome ribosome
SR00978 2.20 Ce RPS-13 2.00E-80 C16A3.9 protein biosynthesis constituent of ribosome ribosome
SR01030 2.20 Ce RPS-5 3.00E-108 T05E11.1 protein biosynthesis constituent of ribosome ribosome
SR00801 2.18 Ce hypo prot: confirmed 9.00E-53 Y82E9BR.3 - - integral to membrane
SR00915 2.08 Ce RPL-29 1.00E-18 B0513.3 protein biosynthesis RNA binding, constituent of ribosome ribosome
SR01068 2.07 Ce RPL-1 4.00E-110 Y71F9AL.13a protein biosynthesis constituent of ribosome ribosome
SR02436 2.07 Ce hypo prot: confirmed 1.00E-57 Q9U330 dephosphorylation, phosphoinositide metabolism, dephosphorylation inositol/phosphatidylinositol phosphatase activity integral to golgi and endoplasmic reticulum membrane
SR00026 2.06 Ce4 RPA-1 2.00E-45 Y37E3.7 - - -
SR00886 2.06 Ce RPL-34 1.00E-32 C42C1.14 protein biosynthesis constituent of ribosome ribosome
SR00811 2.04 Ce RPS-20 9.00E-52 Y105E8A.16 protein biosynthesis & metabolism - ribosome
SR00588 2.04 Ce COL-156 2.00E-76 F57B7.3 cuticle biosynthesis constituent of cuticle extracellular
SR02281 2.00 Ce hypo prot: confirmed 3.00E-40 Q21732 - - -
  1. 1The mean cluster L1 : iL3 difference in expression.
  2. 2 The most significant BLAST alignment for each cluster, the BLAST score, E, and GenBank accession number.
  3. 3Gene ontology slim term, [52].
  4. 4 Ce: C. elegans
  5. 5hypo prot – hypothetical protein; predicted – ORF predicted by GeneFinder in WormBase [53]; partially confirmed – partial sequence cloned; confirmed – full-length sequence cloned.
  6. 6- = no assignment or alignment, as appropriate.