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Table 4 The 37 L1-up clusters (Table 1) showing the mean cluster fold change between L1 and iL3 stages, the most significant BLAST alignment and the GO slim terms, arranged by descending L1 : iL3 difference in expression.

From: A microarray analysis of gene expression in the free-living stages of the parasitic nematode Strongyloides ratti

Cluster

Expression1

BLAST alignment2

E2

Accession number2

Gene ontology (GO) slim term3

     

Process

Function

Component

SR01196

3.65

Ce4 hypo prot5: confirmed

2.00E-16

Y34B4A.6

-6

-

-

SR00880

3.13

Ce RPS-29

4.00E-28

B0412.4

embryogenesis & morphogenesis

-

ribosome

SR01112

2.87

-6

-

-

-

-

-

SR00783

2.78

Ce RPS-21

2.00E-33

F37C12.11

protein biosynthesis

constituent of ribosome

ribosome

SR00048

2.77

Ce RPL-30

2.00E-39

Y106G6H.3

-

-

-

SR02498

2.77

-

-

-

-

-

-

SR00689

2.64

Ce RPL-38

7.00E-17

C06B8.8

protein biosynthesis

RNA binding, constituent of ribosome

ribosome

SR02484

2.57

-

-

-

-

-

-

SR01003

2.54

Ce RPS-14

1.00E-79

F37C12.9

protein biosynthesis & metabolism

-

ribosome

SR01012

2.50

Ce RPS-15

8.00E-67

F36A2.6

embryogenesis & morphogenesis

-

-

SR00216

2.43

Ce hypo prot: confirmed

2.00E-33

C14A4.1

embryogenesis & morphogenesis

-

phycobilisome

SR00059

2.38

Ce RPS-10

4.00E-42

D1007.6

embryogenesis & morphogenesis

-

-

SR00938

2.38

Ce RPL-33

2.00E-37

F10E7.7

-

tRNA binding

-

SR00178

2.35

Ce hypo prot: predicted

7.00E-12

VK10D6R.1

-

-

-

SR02516

2.35

Ce VHA-2

3.00E-16

P34546

proton transport

-

integral to membrane

SR00926

2.31

Ce RPL-23

2.00E-76

B0336.10

protein biosynthesis & metabolism

-

ribosome

SR00943

2.31

Ce RPL-14

4.00E-44

C04F12.4

embryogenesis & morphogenesis

-

ribosome

SR00211

2.30

Ce RPL-31

4.00E-45

W09C5.6a

protein biosynthesis

constituent of ribosome

ribosome

SR00804

2.30

Ce RPS-11

5.00E-62

F40F11.1

embryogenesis & morphogenesis

-

ribosome

SR00871

2.30

Ce LYS-4

6.00E-60

F58B3.1

-

-

-

SR00951

2.28

Ce RPL-37

1.00E-39

W01D2.1

-

-

-

SR01225

2.28

Ce hypo prot: confirmed

3.00E-41

C30C11.1

protein biosynthesis

-

mitochondrial ribosome

SR00012

2.27

Ce COL-34

1.00E-15

F36A4.10

-

-

-

SR02773

2.27

Ce adenylate kinase

1.00E-92

P34346

-

adenylate kinase activity

-

SR01008

2.23

Ce RPS-26

9.00E-61

F39B2.6

larval development

-

-

SR01007

2.22

Ce RPS-4

1.00E-111

Y43B11AR.4

protein biosynthesis

constituent of ribosome

ribosome

SR00978

2.20

Ce RPS-13

2.00E-80

C16A3.9

protein biosynthesis

constituent of ribosome

ribosome

SR01030

2.20

Ce RPS-5

3.00E-108

T05E11.1

protein biosynthesis

constituent of ribosome

ribosome

SR00801

2.18

Ce hypo prot: confirmed

9.00E-53

Y82E9BR.3

-

-

integral to membrane

SR00915

2.08

Ce RPL-29

1.00E-18

B0513.3

protein biosynthesis

RNA binding, constituent of ribosome

ribosome

SR01068

2.07

Ce RPL-1

4.00E-110

Y71F9AL.13a

protein biosynthesis

constituent of ribosome

ribosome

SR02436

2.07

Ce hypo prot: confirmed

1.00E-57

Q9U330

dephosphorylation, phosphoinositide metabolism, dephosphorylation

inositol/phosphatidylinositol phosphatase activity

integral to golgi and endoplasmic reticulum membrane

SR00026

2.06

Ce4 RPA-1

2.00E-45

Y37E3.7

-

-

-

SR00886

2.06

Ce RPL-34

1.00E-32

C42C1.14

protein biosynthesis

constituent of ribosome

ribosome

SR00811

2.04

Ce RPS-20

9.00E-52

Y105E8A.16

protein biosynthesis & metabolism

-

ribosome

SR00588

2.04

Ce COL-156

2.00E-76

F57B7.3

cuticle biosynthesis

constituent of cuticle

extracellular

SR02281

2.00

Ce hypo prot: confirmed

3.00E-40

Q21732

-

-

-

  1. 1The mean cluster L1 : iL3 difference in expression.
  2. 2 The most significant BLAST alignment for each cluster, the BLAST score, E, and GenBank accession number.
  3. 3Gene ontology slim term, [52].
  4. 4 Ce: C. elegans
  5. 5hypo prot – hypothetical protein; predicted – ORF predicted by GeneFinder in WormBase [53]; partially confirmed – partial sequence cloned; confirmed – full-length sequence cloned.
  6. 6- = no assignment or alignment, as appropriate.