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Figure 2 | BMC Genomics

Figure 2

From: Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

Figure 2

In silico detected SNPs and experimentally verified SNPs according to P SNP . A subset of the predicted SNPs was verified by the independant resequencing of fragments amplified from the genomic DNA extracted from the PG653 genotype. The sequence traces were manually inspected to verify the sites where SNPs were predicted by PolyBayes. Predicted SNPs that were indeed found in the genomic DNA sequence were called "true positives" (in blue on the figure), whereas the ones that were not verified were called "false positives" (in yellow on the figure).

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BMC Genomics

ISSN: 1471-2164

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