Table 6 Fungal expressed sequences used for constructing the two ad hoc fungal databases. Two new protein and nucleotide databases were used to filter out sequences not previously matched with fungal data belonging to the original fungal database. The nucleotide database included only unigenes, ESTs and mitochondrial sequences.
From: Comparative EST analysis provides insights into the basal aquatic fungus Blastocladiella emersonii
Species/Strain | Data | Lineage | Sequencing/Source center |
|---|---|---|---|
Ajellomyces capsulatus | protein | Ascomycota/Eurotiomycetes | NCBI |
Aspergillus flavus | protein | Ascomycota/Eurotiomycetes | NCBI |
Aspergillus fumigatus Af293 | protein | Ascomycota/Eurotiomycetes | FC/JGI |
Aspergillus nidulans FGSC A4 | protein | Ascomycota/Eurotiomycetes | Broad Institute/JGI |
Botrytis cinerea | protein | Ascomycota/Leotiomycetes | Broad Institute |
Candida glabrata CBS138 | protein | Ascomycota/Saccharomycetes | Institut Pasteur/JGI |
Candida guillermondii | protein | Ascomycota/Saccharomycetes | Broad Institute |
Candida lusitaniae | protein | Ascomycota/Saccharomycetes | Broad Institute |
Chaetomium globosum | protein | Ascomycota/Sordariomycetes | Broad Institute |
Coccidioides immitis | protein | Ascomycota/Eurotiomycetes | Broad Institute |
Coprinus cinereus | protein | Basidiomycota/Homobasidiomycetes | Broad Institute |
Cryptococcus neoformans H99 | protein | Basidiomycota/Heterobasidiomycetes | Broad Institute |
Cryptococcus neoformans JEC21 | protein | Basidiomycota/Heterobasidiomycetes | TIGR/JGI |
Debaryomyces hansenii CBS767 | protein | Ascomycota/Saccharomycetes | CNRS, Genoscope/JGI |
Encephalitozoon cuniculi GB-M | protein | Microsporidia | Genoscope, Univ. Blaise Pascal/JGI |
Eremothecium gossypii | protein | Ascomycota/Saccharomycetes | Basel Univ., Syngenta AG/JGI |
Fusarium graminearum | protein | Ascomycota/Sordariomycetes | Broad Institute |
Gibberella zeae PH-1 | protein | Ascomycota/Sordariomycetes | International Consortium/JGI |
Kluyveromyces lactis NRRL Y-MHO | protein | Ascomycota/Saccharomycetes | Univ. Claude Bernard, Genoscope, Institut Pasteur/JGI |
Magnaporthe grisea 70–15 | protein | Ascomycota/Sordariomycetes | Broad Institute/JGI |
Nectria haematococca | protein | Ascomycota/Sordariomycetes | Joint Genome Institute |
Neurospora crassa | protein | Ascomycota/Sordariomycetes | Broad Institute |
Phanerochaete crysosporium | protein | Basidiomycota/Homobasidiomycetes | Joint Genome Institute |
Pichia stipitis | protein | Ascomycota/Saccharomycetes | Joint Genome Institute |
Rhizopus oryzae | protein | Zigomycota/Zygomycetes | Broad Institute |
Saccharomyces cerevisiae | protein | Ascomycota/Saccharomycetes | International Consortium/JGI |
Schizosaccharomyces pombe 972 h | protein | Ascomycota/Schizosaccharomycetes | Sanger Institute, Cold Spring Harbor Laboratory/JGI |
Sclerotinia sclerotiorum | protein | Ascomycota/Leotiomycetes | Broad Institute |
Stagonospora nodorum | protein | Ascomycota/Dothideomycetes | Broad Institute |
Trichoderma reseei | protein | Ascomycota/Sordariomycetes | Joint Genome Institute |
Ustilago maydis | protein | Basidiomycota/Ustilagomycetes | Broad Institute |
Yarrowia lipolytica CLIB122 | protein | Ascomycota/Saccharomycetes | CNRS, Genoscope/JGI |
Ajellomyces capsulatus | ESTs | Ascomycota/Eurotiomycetes | Washington University/NCBI |
Aspergillus flavus | unigene | Ascomycota/Eurotiomycetes | University of Oklahoma |
Botrytis cinerea | mitochondrial | Ascomycota/Leotiomycetes | Broad Institute |
Candida tropicalis | mitochondrial | Ascomycota/Saccharomycetes | Broad Institute |
Coccidioides immitis | mitochondrial | Ascomycota/Eurotiomycetes | Broad Institute |
Coprinus cinereus | ESTs | Basidiomycota/Homobasidiomycetes | Patricia Pukkila, Univ. North Carolina Chapel/Broad Institute |
Coprinus cinereus | unigene | Basidiomycota/Homobasidiomycetes | University of Oklahoma |
Cryptococcus neoformans 184A | ESTs | Basidiomycota/Heterobasidiomycetes | University of Oklahoma |
Cryptococcus neoformans B3501 | ESTs | Basidiomycota/Heterobasidiomycetes | University of Oklahoma |
Cryptococcus neoformans H99 | ESTs | Basidiomycota/Heterobasidiomycetes | University of Oklahoma |
Fusarium sporotrichiodes | unigene | Ascomycota/Sordariomycetes | University of Oklahoma |
Fusarium verticillioides | mitochondrial | Ascomycota/Sordariomycetes | Broad Institute |
Histoplasma capsulatum | mitochondrial | Ascomycota/Eurotiomycetes | Broad Institute |
Laccaria sp. | ESTs | Basidiomycota/Homobasidiomycetes | Joint Genome Institute |
Magnaporthe grisea | mitochondrial | Ascomycota/Sordariomycetes | Broad Institute |
Neurospora crassa | mitochondrial | Ascomycota/Sordariomycetes | Broad Institute |
Neurospora crassa | unigene | Ascomycota/Sordariomycetes | University of Oklahoma |
Rhizopus oryzae | mitochondrial | Zigomycota/Zygomycetes | Broad Institute |
Sclerotinia sclerotiorum | mitochondrial | Ascomycota/Leotiomycetes | Broad Institute |
Uncinocarpus reesii | mitochondrial | Ascomycota/Eurotiomycetes | Broad Institute |
Ustilago maydis | mitochondrial | Basidiomycota/Ustilagomycetes | Broad Institute |