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Table 3

From: The pseudo-mitochondrial genome influences mistakes in heteroplasmy interpretation

Locus

Disease

Allele

Hom/Het

BLAST hits

Cloning data

Leu

MM/CPEO

T 3250C

-/+

C = 16; A = 1

C = 17

Leu

CPEO

C 3254T

+/-

T = 18; A = 2

T = 2, 4 and 17

Leu

MELAS

T 3291C

-/+

C = 17

C = 2, 4 and 17

ND1

NIDDM; LHON; PEO

G 3316A

+/-

A = 17

A = 2, 4, 16, 17

ND1

LHON

G 3496T

+/-

T = 14; A = 2

T = X, 2, 4, 16, & 17

ND1

MELAS

G 3697A

-/+

A = 3; C = 1

A = 2 & 4; G = X, 16, 17

ND1

Adult-Onset Dystonia

A 3796G

-/+

G = 6

A = 2,4 & 17; G = X & 16

 

ADPD/Hearing Loss &

    

Gln

Migrane

T 4336C

+/+

C = 1

C = 17

ND2

AD;PD

G 5460T/A

+/+

T = 5; A = 9

G = 1 (2); T = 2

Asn

CPEO/MM

G 5703A

-/+

A = 24

A = 17

COI

PCA

G 5913A

+/-

A = 18; T = 1

G = 1(2); A = 17

 

Myogloinuria; Exercise

    

CO1

Intolerance

G 5920A

-/+

A = 0

G = 1 (2); A = 17

CO1

PCA

G 5973A

+/-

A = 3

G = 1(2); A = 17

COI

PCA

G 6081A

+/-

A = 1; T = 1

G = 1 (2); A = 17

Ser

MM/Exercise Intolerance

G 7497A

+/+

A = 14

A = 5

ATP6

LDYT

G 8950A

+/-

A = 2

A = 5

ATP6

Leigh Disease

T 9185C

-/+

C = 1

C = 5

ND4

MELAS

A 11084G

+/+

G = 9

G = 9

His

MICM

G 12192A

+/-

A = 9

G = 5 (3); A = 2(5)

ND5

LHON

G 13708A

+/-

A = 15

A = 5 & 9

 

Paracrystalline Inclusions

    

CYTB

with Exercise Intolerance

G 15497A

+/-

A = 2

A = 17

Thr

Multiple Sclerosis

G 15927A

+/-

A = 5

G = 5; A = 17

 

Type 2 Diabetes;

    

D-Loop

Cardiomyopathy

T 16189C

+/+

C = 0

C = 17

  1. Hom: homoplasmy; Het: heteroplasmy;BLAST hits: number of times a unique numt nucleotide location was returned with a BLAST search; Cloning data: designates chromosome(s) location of nucleotide from cloning data; AD: Alzeimer's Disease; ADPD: Alzeimer's and Parkinson's Disease; PD: Parkinson's Disease; CPEO: Chronic Progressive External Opthalmoplegia; PEO: Progressive External Opthalmoplegia; LDYT: Leber's hereditary optic neuropathy and Dystonia; MELAS: Mitochondrial Encephalomyopathy, Lactic Acidosis and Stroke-like episodes; LHON: Leber's Hereditary Optic Neuropathy; MICM: Maternally Inherited Cardiomyopathy; MM: Mitochondrial Myopathy;NIDDM: Non-Insulin Dependent Diabetes; PCA: Prostate Cancer.