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Table 5 Oryzias latipes genes under positive Darwinian selection with significantly lower distance to the human ortholog than other fish species. Duplicated genes are given with rate differences between the two copies according to the relative rate test of Tajima (1993) at the 5% level with one asterisk and at the 1% level with two asterisks.

From: Many genes in fish have species-specific asymmetric rates of molecular evolution

GenBank Acc# annotation according to human (UniGene) duplicate rate difference
AJ457222 DNA topoisomerase I -
AU167343 CLIP-associating protein 1 -
AU167618 Ras-related associated with diabetes -
AU167923 atrophin-1 interacting protein 1 -
AU176665 TAF6-like RNA polymerase II -
AU177030 protein inhibitor of activated STAT X isoform beta -
AU177176 metastasis suppressor 1 -
AU177627 Utrophin -
AU180234 SNF2 histone linker PHD RING helicase -
AV668786 AMPK-related protein kinase 5 -
AV670534 hippocampus abundant transcript 1 0.080*
BJ000375 ephrin receptor EphA2 0.149*
BJ003764 mitogen-activated protein kinase kinase kinase kinase 3 -
BJ004731 NICE-4 protein -
BJ005724 tsJ homolog 1 isoform a -
BJ007326 transcription factor T -
BJ007726 G protein-coupled receptor 155 -
BJ008665 transducin-like enhancer protein 4 -
BJ008817 protein kinase C and casein kinase substrate in neurons 2 -
BJ021405 nucleoporin 62 kDa -
BJ488812 fibulin 6 -
BJ490986 TRAF2 and NCK interacting kinase -
BJ493563 PDZ domain containing ring finger 1 -
BJ495426 endothelin converting enzyme 1 0.084
BJ501370 DIP2-like protein isoform a -
BJ517858 microfibrillar-associated protein 1 -
BJ519269 BCL2/adenovirus E1B 19kD interacting protein 2 -
BJ524171 component of oligomeric golgi complex 4 -
BJ527988 UDP-glucose ceramide glucosyltransferase-like 1 -
BJ539899 nuclear phosphoprotein PWP1 -
BJ543391 ribosomal protein L27a -
BJ704447 pre-B-cell colony enhancing factor 1 isoform a -
BJ704659 TCDD-inducible poly(ADP-ribose) polymerase -
BJ706497 ubiquitin specific protease 34 -
BJ713400 neuro-oncological ventral antigen 1 isoform 2 -
BJ717464 thimet oligopeptidase 1 -
BJ724303 dihydrolipoamide S-succinyltransferase -
BJ728080 myeloid/lymphoid or mixed-lineage leukemia 3 -
BJ728082 chromodomain helicase DNA binding protein 4 -
BJ728281 engulfment and cell motility 1 isoform 1 -
BJ728299 transcription factor AP-2 alpha -
BJ728451 spermine synthase -
BJ728665 Rb1-inducible coiled coil protein 1 -
BJ729946 intersectin 1 isoform ITSN-l -
BJ730543 B-cell lymphoma 6 protein; -
BJ730756 RE1-silencing transcription factor -
BJ731205 MLL septin-like fusion -
BJ733043 T-cell lymphoma invasion and metastasis 1 -
BJ733490 RAD21 homolog -
BJ733549 SH3-domain binding protein 4 -
BJ734934 serine/threonine kinase 2 -
BJ735209 methylene tetrahydrofolate dehydrogenase 2 precursor -
BJ735433 Huntingtin -
BJ736888 bromodomain containing protein 2 -
BJ737071 fibrinogen C domain containing 1 0.061
BJ742416 JM1 protein -
BJ743130 Moesin -
BJ746379 microtubule associated serine/threonine kinase-like -