Table 5 Oryzias latipes genes under positive Darwinian selection with significantly lower distance to the human ortholog than other fish species. Duplicated genes are given with rate differences between the two copies according to the relative rate test of Tajima (1993) at the 5% level with one asterisk and at the 1% level with two asterisks.
From: Many genes in fish have species-specific asymmetric rates of molecular evolution
GenBank Acc# | annotation according to human (UniGene) | duplicate rate difference |
|---|---|---|
AJ457222 | DNA topoisomerase I | - |
AU167343 | CLIP-associating protein 1 | - |
AU167618 | Ras-related associated with diabetes | - |
AU167923 | atrophin-1 interacting protein 1 | - |
AU176665 | TAF6-like RNA polymerase II | - |
AU177030 | protein inhibitor of activated STAT X isoform beta | - |
AU177176 | metastasis suppressor 1 | - |
AU177627 | Utrophin | - |
AU180234 | SNF2 histone linker PHD RING helicase | - |
AV668786 | AMPK-related protein kinase 5 | - |
AV670534 | hippocampus abundant transcript 1 | 0.080* |
BJ000375 | ephrin receptor EphA2 | 0.149* |
BJ003764 | mitogen-activated protein kinase kinase kinase kinase 3 | - |
BJ004731 | NICE-4 protein | - |
BJ005724 | tsJ homolog 1 isoform a | - |
BJ007326 | transcription factor T | - |
BJ007726 | G protein-coupled receptor 155 | - |
BJ008665 | transducin-like enhancer protein 4 | - |
BJ008817 | protein kinase C and casein kinase substrate in neurons 2 | - |
BJ021405 | nucleoporin 62 kDa | - |
BJ488812 | fibulin 6 | - |
BJ490986 | TRAF2 and NCK interacting kinase | - |
BJ493563 | PDZ domain containing ring finger 1 | - |
BJ495426 | endothelin converting enzyme 1 | 0.084 |
BJ501370 | DIP2-like protein isoform a | - |
BJ517858 | microfibrillar-associated protein 1 | - |
BJ519269 | BCL2/adenovirus E1B 19kD interacting protein 2 | - |
BJ524171 | component of oligomeric golgi complex 4 | - |
BJ527988 | UDP-glucose ceramide glucosyltransferase-like 1 | - |
BJ539899 | nuclear phosphoprotein PWP1 | - |
BJ543391 | ribosomal protein L27a | - |
BJ704447 | pre-B-cell colony enhancing factor 1 isoform a | - |
BJ704659 | TCDD-inducible poly(ADP-ribose) polymerase | - |
BJ706497 | ubiquitin specific protease 34 | - |
BJ713400 | neuro-oncological ventral antigen 1 isoform 2 | - |
BJ717464 | thimet oligopeptidase 1 | - |
BJ724303 | dihydrolipoamide S-succinyltransferase | - |
BJ728080 | myeloid/lymphoid or mixed-lineage leukemia 3 | - |
BJ728082 | chromodomain helicase DNA binding protein 4 | - |
BJ728281 | engulfment and cell motility 1 isoform 1 | - |
BJ728299 | transcription factor AP-2 alpha | - |
BJ728451 | spermine synthase | - |
BJ728665 | Rb1-inducible coiled coil protein 1 | - |
BJ729946 | intersectin 1 isoform ITSN-l | - |
BJ730543 | B-cell lymphoma 6 protein; | - |
BJ730756 | RE1-silencing transcription factor | - |
BJ731205 | MLL septin-like fusion | - |
BJ733043 | T-cell lymphoma invasion and metastasis 1 | - |
BJ733490 | RAD21 homolog | - |
BJ733549 | SH3-domain binding protein 4 | - |
BJ734934 | serine/threonine kinase 2 | - |
BJ735209 | methylene tetrahydrofolate dehydrogenase 2 precursor | - |
BJ735433 | Huntingtin | - |
BJ736888 | bromodomain containing protein 2 | - |
BJ737071 | fibrinogen C domain containing 1 | 0.061 |
BJ742416 | JM1 protein | - |
BJ743130 | Moesin | - |
BJ746379 | microtubule associated serine/threonine kinase-like | - |