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Table 2 P element and P-MITE families copies distributions

From: P elements and MITE relatives in the whole genome sequence of Anopheles gambiae

family

len.

Copy number

chrX (22.1 Mb)

chr2L (48.8 Mb)

chr2R (62.7 Mb)

chr3L (41.3 Mb)

chr3R (53.3 Mb)

chrU (59.6 Mb)

med len.

med. len. %

med. cons. id.

  

all

Compl.

               

AgaP12cons

5329

41

1

3

0.14

2

0.04

5

0.08

8

0.19

6

0.11

17

0.29

76

1.4

88.2

AgaP12MITE205Acons

205

496

310

70

3.16

61

1.25

36

0.57

51

1.24

47

0.88

231

3.88

205

100.0

98.0

AgaP12MITE205Bcons

206

413

286

53

2.39

56

1.15

64

1.02

36

0.87

32

0.60

172

2.89

206

100.0

98.4

AgaP13cons

4105

35

1

1

0.05

2

0.04

5

0.08

1

0.02

1

0.02

25

0.42

290

7.1

89.5

AgaP13MITE259cons

259

173

95

23

1.04

21

0.43

24

0.38

12

0.29

12

0.23

81

1.36

258

99.6

97.7

AgaP13MITE412cons

412

193

66

8

0.36

36

0.74

48

0.77

32

0.78

36

0.68

33

0.55

311

75.5

88.9

AgaP13MITE592cons

592

143

33

1

0.05

21

0.43

34

0.54

28

0.68

29

0.54

30

0.50

339

57.3

89.2

AgaP15cons

4876

34

2

2

0.09

0

0.00

3

0.05

4

0.10

6

0.11

19

0.32

122.5

2.5

90.3

AgaP15MITE617cons

617

571

238

79

3.57

59

1.21

49

0.78

48

1.16

48

0.90

288

4.83

541

87.7

95.3

AgaP1cons

3064

41

4

1

0.05

3

0.06

1

0.02

2

0.05

0

0.00

34

0.57

177

5.8

86.4

AgaP2cons

4159

34

6

1

0.05

5

0.10

3

0.05

4

0.10

5

0.09

16

0.27

458.5

11.0

91.8

AgaP2P12MITE326cons

326

132

58

10

0.45

21

0.43

22

0.35

7

0.17

9

0.17

63

1.06

275

84.4

93.9

AgaP3cons

4822

41

2

2

0.09

3

0.06

3

0.05

5

0.12

3

0.06

25

0.42

223

4.6

88.6

AgaP4cons

6314

58

4

9

0.41

4

0.08

3

0.05

6

0.15

1

0.02

35

0.59

361.5

5.7

81.3

AgaP4MITE559cons

559

218

80

14

0.63

33

0.68

46

0.73

28

0.68

35

0.66

62

1.04

455.5

81.5

92.0

AgaP4MITE675cons

675

187

49

5

0.23

29

0.59

43

0.69

23

0.56

39

0.73

48

0.81

442

65.5

91.5

AgaP6cons

905

3

0

0

0.00

1

0.02

0

0.00

0

0.00

0

0.00

2

0.03

133

14.7

95.5

AgaP8cons

3510

17

1

3

0.14

2

0.04

0

0.00

1

0.02

0

0.00

11

0.18

511

14.6

93.6

AgaP8MITE2450cons

493

44

5

6

0.27

5

0.10

1

0.02

1

0.02

2

0.04

29

0.49

224

45.4

95.4

P-masters

 

304

21

22

0.99

22

0.45

23

0.37

31

0.75

22

0.41

184

3.09

   

P-MITEs

 

2570

1220

269

12.15

342

7.01

367

5.85

266

6.44

289

5.42

1037

17.41

   

All P

 

2874

 

291

13.14

364

7.46

390

6.22

297

7.19

311

5.84

1221

20.50

   

No P

 

43938

 

4245

191.69

5998

122.92

5919

94.36

5227

126.61

6141

115.28

16408

275.45