Table 1 Comparison of genome coverage. Coverage was derived from the individual sequences generated from either unamplified control or whole genome amplified samples.
Halobacterium species NRC-1 | |||
|---|---|---|---|
Sample | Total Bases Sequenced | Nonredundant Bases Sequenced | Percent of Genome |
Unamplified Control | 9543911 | 2183656 | 84.9% |
Unamplified Replicate 1 | 9540329 | 2188525 | 85.1% |
Unamplified Replicate 2 | 9540870 | 2184161 | 85.0% |
Unamplified Replicate 3 | 9541768 | 2179647 | 84.8% |
Unamplified Replicate 4 | 9543517 | 2183939 | 84.9% |
Averaged Replicates | 9541621 | 2184068 | 84.9% |
GenomiPhi | 9736445 | 1287564 | 50.1% |
Repli-G | 9432145 | 933686 | 36.3% |
PEP-PCR | 9410215 | 921446 | 35.8% |
DOP-PCR | 9010086 | 249571 | 9.7% |
Campylobacter jejuni | |||
Sample | Total Bases Sequenced | Nonredundant Bases Sequenced | Percent of Genome |
Unamplified Control | 10605551 | 1635277 | 99.6% |
Unamplified Replicate 1 | 10605882 | 1636507 | 99.7% |
Unamplified Replicate 2 | 10592192 | 1636033 | 99.7% |
Unamplified Replicate 3 | 10603419 | 1636620 | 99.7% |
Unamplified Replicate 4 | 10588370 | 1637090 | 99.7% |
Averaged Replicates | 10597466 | 1636563 | 99.7% |
GenomiPhi | 10380921 | 1623858 | 98.9% |
Repli-G | 10939177 | 1625276 | 99.0% |
PEP-PCR | 10313911 | 1549641 | 94.4% |
DOP-PCR | 9605188 | 278645 | 17.0% |