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Table 1 Shigella spp. strains used in this study and number of MG1655 ORFs absent/divergent

From: The use of comparative genomic hybridization to characterize genome dynamics and diversity among the serotypes of Shigella

Subgroup Type No. Strain Abbreviation Source* No. of absent ORFs#
Dysenteriae 1 197 D1 CCDC 954
  2 G1252 D2 NKU 535
  3 G1281 D3 NKU 705
  4 G1190 D4 NKU 802
  5 G1213 D5 NKU 792
  6 G1192 D6 NKU 720
  7 G1222 D7 NKU 813
  8 G1221 D8 NKU 561
  9 G1274 D9 NKU 687
  10 G1292 D10 NKU 655
  11 G1246 D11 NKU 745
  12 G1263 D12 NKU 826
  13 G1271 D13 NKU 777
Flexneri 1a 571 F1a CCDC 729
  1b 572 F1b CCDC 694
  2a 301 F2a CCDC 675
  2b 251 F2b CCDC 685
  3 575 F3 CCDC 791
  4a 576 F4a CCDC 668
  4b 577 F4b CCDC 687
  5 246 F5 CCDC 678
  6 579 F6 CCDC 784
  Variant x 580 Fx CCDC 735
  Variant y 581 Fy CCDC 795
Boydii 1 G1228 B1 NKU 736
  2 G1184 B2 NKU 754
  3 G1232 B3 NKU 956
  4 227 B4 CCDC 774
  5 G1186 B5 NKU 476
  6 G1227 B6 NKU 765
  7 G1187 B7 NKU 549
  8 G1268 B8 NKU 835
  9 G1236 B9 NKU 528
  10 G1294 B10 NKU 850
  11 G1191 B11 NKU 588
  12 G1287 B12 NKU 794
  13 G1226 B13 NKU 896
  14 G1300 B14 NKU 907
  15 G1282 B15 NKU 595
  16 G1219 B16 NKU 589
  17 G1214 B17 NKU 663
  18 G1224 B18 NKU 881
Sonnei   46 SS NICPBP 584
  1. * NKU, NanKai University, Tianjin, China; CCDC, Chinese Center for Disease Control and prevention, Beijing, China; NICPBP, National Institute of the Control of Pharmaceutical and Biological Products, Beijing, China.
  2. # Altogether, 2,245 ORFs were absent in at least one strain, and 137 ORFs were commonly absent in 43 strains.