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Table 1 Summary of sequence alignments and analyses of synteny and segmental homology using the full set of mapped Ambystoma sequences

From: Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution

Species

Divergence

Orthologs

BLAT

λ

% in

 

Timea

 

Alignments

 

SHb

Human

370 MY

322

341

0.25 ± 0.12

32

Dog

370 MY

317

340

0.24 ± 0.12

25

Mouse

370 MY

308

350

0.18 ± 0.12

27

Rat

370 MY

316

340

0.19 ± 0.13

23

Chicken

370 MY

284

301

0.33 ± 0.13

34

T.nigroviridis

450 MY

243

255

0.23 ± 0.14

2

Zebrafish

450 MY

237

248

0.18 ± 0.15

3

Total Numbers

 

343

2175

 

57

  1. aThe approximate divergence time in millions of years (MY) between Ambystoma and the vertebrate species used in this study. See Figure 1 for references.
  2. bSH = Segmental Homologies.
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BMC Genomics

ISSN: 1471-2164

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