Table 2 Pair-wise comparison of the 1,528 conserved genes among the four sequenced strains of Xylella fastidiosa.
Strains | Bp | Paired (%) | Unpaired (%) | INDEL (%) | External (%) | Internal (%) | SNP (%) | Transition (%) | Transversion (%) |
|---|---|---|---|---|---|---|---|---|---|
9a5c + Ann1 | 3051309 | 2951615 (96.733) | 99694 (3.267) a | 56195 (1.842) | 55009 (1.803) | 1186 (0.039) | 43499 (1.426) | 6390 (0.209) | 37071 (1.215) |
9a5c + Dixon | 3038700 | 2915651 (95.951) | 123049 (4.049) a | 82760 (2.724) | 80563 (2.651) | 2197 (0.072) | 40289 (1.326) | 5956 (0.196) | 34277 (1.128) |
9a5c + Temecula1 | 3047657 | 2971366 (97.497) | 76291 (2.503) c | 31527 (1.034) | 30196 (0.991) | 1331 (0.044) | 44764 (1.469) | 6588 (0.216) | 38176 (1.253) |
Ann1+ Dixon | 3019029 | 2920562 (96.738) | 98467 (3.262) b | 75229 (2.492) | 73471 (2.434) | 1758 (0.058) | 23238 (0.77) | 3224 (0.107) | 19939 (0.66) |
Ann1+ Temecula1 | 3047447 | 2971117 (97.495) | 76330 (2.505) c | 57413 (1.884) | 55283 (1.814) | 2130 (0.07) | 18917 (0.621) | 3071 (0.101) | 15808 (0.519) |
Dixon+Temecula1 | 3013442 | 2903990 (96.368) | 109452 (3.632) b | 83880 (2.784) | 80452 (2.67) | 3428 (0.114) | 25572 (0.849) | 3812 (0.126) | 21704 (0.72) |
Average | 3036264 | 2939050 (96.80) | 97213 (3.203) | 64500 (2.13) | 62495 (2.06) | 2005 (0.07) | 32713 (1.08) | 4840 (0.16) | 27829 (0.92) |