Table 2 Indels within intergenic regions.
| Â | Â | SSR | Â | Â | Nearest ORF | |||
|---|---|---|---|---|---|---|---|---|
Isolate | Indel | Unit | Reference | Query | Near Promoter | Near Palindrome | Locus | Annotation |
Lab Culture | 1 | TTGCCCGGCGA | 7 | 6 | yes | no | BMA1136 | Hypothetical protein |
| Â | 2 | TTCGACGC | 29 | 28 | yes | no | BMA2062 | Hypothetical protein |
| Â | 3 | AGTCGGCA | 38 | 39 | no | no | BMA1136 | Hypothetical protein |
| Â | 4 | CGATTGCCCGG | 7 | 8 | yes | no | BMA1138 | ABC transporter, putative |
| Â | 5 | GGGGCTTC | 9 | 8 | no | no | BMA2063 | Transcriptional regulator |
| Â | 6 | TGCGCGA | 19 | 15 | no | no | BMA2374 | THUMP domain protein |
| Â | 7 | No (-G) | NA | NA | yes | no | BMAA0389 | Hypothetical protein |
| Â | 8 | CTGTCGTG | 21 | 22 | no | no | BMAA0376 | Transporter |
| Â | 9 | GTGCGAT | 19 | 20 | no | no | BMAA1878 | Transcriptional regulator |
Mouse Spleen | 1 | GAGGCGT | 26 | 25 | no | no | BMA2774 | Secretory path protein |
| Â | 2 | No (+TT) | NA | NA | yes | no | BMA1596 | Acetyltransferase |
| Â | 3 | CGCGAGG | 23 | 22 | yes | no | BMAA0247 | Oxidoreductase |
| Â | 4 | GTGGCGA | 7 | 6 | no | no | BMAA0375 | Transcriptional regulator |
| Â | 5 | AAGTTCCG | 3 | 4 | yes | no | BMAA0242 | Acyl-CoA dehydrogenase |
| Â | 6 | CTGTCGTG | 21 | 22 | no | no | BMAA0376 | Transporter |
| Â | 7 | TGGCGTT | 26 | 27 | yes | no | BMAA0242 | Acyl-CoA dehydrogenase |
| Â | 8 | GAAAGAGAC | 10 | 11 | yes | no | BMAA0815 | DNA-binding regulator |
Horse Lung | 1 | GTGAGCC | 13 | 14 | no | no | BMA0984 | Hypothetical protein |
| Â | 2 | No (-C) | NA | NA | no | yes | BMAA1128 | ABC Transporter |
| Â | 3 | GGGAAACGCGAAAC | 6 | 5 | yes | no | BMAA1873 | Hypothetical protein |
| Â | 4 | No (-C) | NA | NA | no | yes | BMAA1868 | Aconitate hydratase |
| Â | 5 | No (+C) | NA | NA | no | yes | BMAA1420 | Synthetase protein |
| Â | 6 | No (+T) | NA | NA | no | yes | BMAA1237 | Carboxyvinyltransferase |
| Â | 7 | GCGAAAC | 5 | 6 | no | yes | BMAA1872 | Chemotaxis protein |
| Â | 8 | GATGAGC | 19 | 20 | no | yes | BMAA0612 | Signal sequence protein |
Human Liver | 1 | GGCAAGTC | 38 | 40 | no | yes | BMA1135 | Drug resistance transporter |
| Â | 2 | No (-C) | NA | NA | no | yes | BMAA1868 | Aconitate hydratase |
| Â | 3 | GTGCTGTC | 21 | 22 | no | yes | BMAA0375 | Transcriptional regulator |
Human Blood | 1 | TTGGCGC | 111 | 109 | no | no | BMAA1866 | Conserved hypothetical protein |
| Â | 2 | AAGCAGC | 42 | 40 | no | yes | BMAA0117 | 6-phosphofructokinase (pfk) |
| Â | 3 | GTGCTGTC | 21 | 22 | no | yes | BMAA0375 | Transcriptional regulator |
| Â | 4 | No (-C) | NA | NA | no | yes | BMAA1128 | ABC transporter |
| Â | 5 | No (-C) | NA | NA | no | yes | BMAA1868 | Aconitate hydratase |