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Table 2 Indels within intergenic regions.

From: Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts

   SSR    Nearest ORF
Isolate Indel Unit Reference Query Near Promoter Near Palindrome Locus Annotation
Lab Culture 1 TTGCCCGGCGA 7 6 yes no BMA1136 Hypothetical protein
  2 TTCGACGC 29 28 yes no BMA2062 Hypothetical protein
  3 AGTCGGCA 38 39 no no BMA1136 Hypothetical protein
  4 CGATTGCCCGG 7 8 yes no BMA1138 ABC transporter, putative
  5 GGGGCTTC 9 8 no no BMA2063 Transcriptional regulator
  6 TGCGCGA 19 15 no no BMA2374 THUMP domain protein
  7 No (-G) NA NA yes no BMAA0389 Hypothetical protein
  8 CTGTCGTG 21 22 no no BMAA0376 Transporter
  9 GTGCGAT 19 20 no no BMAA1878 Transcriptional regulator
Mouse Spleen 1 GAGGCGT 26 25 no no BMA2774 Secretory path protein
  2 No (+TT) NA NA yes no BMA1596 Acetyltransferase
  3 CGCGAGG 23 22 yes no BMAA0247 Oxidoreductase
  4 GTGGCGA 7 6 no no BMAA0375 Transcriptional regulator
  5 AAGTTCCG 3 4 yes no BMAA0242 Acyl-CoA dehydrogenase
  6 CTGTCGTG 21 22 no no BMAA0376 Transporter
  7 TGGCGTT 26 27 yes no BMAA0242 Acyl-CoA dehydrogenase
  8 GAAAGAGAC 10 11 yes no BMAA0815 DNA-binding regulator
Horse Lung 1 GTGAGCC 13 14 no no BMA0984 Hypothetical protein
  2 No (-C) NA NA no yes BMAA1128 ABC Transporter
  3 GGGAAACGCGAAAC 6 5 yes no BMAA1873 Hypothetical protein
  4 No (-C) NA NA no yes BMAA1868 Aconitate hydratase
  5 No (+C) NA NA no yes BMAA1420 Synthetase protein
  6 No (+T) NA NA no yes BMAA1237 Carboxyvinyltransferase
  7 GCGAAAC 5 6 no yes BMAA1872 Chemotaxis protein
  8 GATGAGC 19 20 no yes BMAA0612 Signal sequence protein
Human Liver 1 GGCAAGTC 38 40 no yes BMA1135 Drug resistance transporter
  2 No (-C) NA NA no yes BMAA1868 Aconitate hydratase
  3 GTGCTGTC 21 22 no yes BMAA0375 Transcriptional regulator
Human Blood 1 TTGGCGC 111 109 no no BMAA1866 Conserved hypothetical protein
  2 AAGCAGC 42 40 no yes BMAA0117 6-phosphofructokinase (pfk)
  3 GTGCTGTC 21 22 no yes BMAA0375 Transcriptional regulator
  4 No (-C) NA NA no yes BMAA1128 ABC transporter
  5 No (-C) NA NA no yes BMAA1868 Aconitate hydratase
  1. NA: Not applicable.